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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCAAGTTTGGTGCAGTCTGTCGTTTCCATCATCCACATGAAAGGATGATTCCTGCTCCTGACTGTGTTTTGAGTCCTATAGGTCTTCCTTTACGTCCTGtgagttgattttttgctcgagttctatataccaagtttatttttcattaagatagatctttttacctgaatttacacttcattatagttctcataggttt...

Basic information

species Glycine max
transcript GLYMA18G47660.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G47660.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv04s0023g00370.t01 (Vitis vinifera), 5'ss of exon 6
-TGCAAGTTTGGTGCAGTCTGTCGTTTCCATCATCCACATGAAAGGATGATTCCTGCTCCTGACTGTGTTTTGAGTCCTATAGGTCTTCCTTTACGTCCTGtgagttgattttttgctcg--agttctatataccaagtttatttttcattaagatagatctttttacctgaatttacacttcattatagttctcataggttt
 || ||||||||||| || ||| | |||||||||||    |||||  |||| ||| |||| || |||||||||||||| ||||| || ||||||||||| ||||||||  | ||||||    |||| | | | |||  |||  || |   ||   |||    |   |  ||  |||||  ||  ||    ||  | |  |   
TTGTAAGTTTGGTGCGGTTTGTAGGTTCCATCATCCCAGAGAAAGACTGATCCCTACTCCGGATTGTGTTTTGAGTCCCATAGGCCTCCCTTTACGTCCGgtgagttgcctctttgcttttcagttttgttttccat-tttggttattggtattgtagcatatggcaaatgtctttactgtttcttgggttttgcttctga--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209697216|gb|BW672981.1|BW672981
EST:     TCCTGCTCCTGACTGTGTTTTGAGTCCTATAGGTCTTCCTTTACGTCCTG                         GAGAGCCCCTGTGTGTGTTCTATTCACGTTATGGCATATGCAAATTTGGTC
genomic: TCCTGCTCCTGACTGTGTTTTGAGTCCTATAGGTCTTCCTTTACGTCCTGtgagttgatt ... ttcctacaggGAGAGCCCCTGTGTGTGTTCTATTCACGTTATGGCATATGCAAATTTGGTC
EST: gi|12690331|gb|BG156667.1|BG156667
EST:     TCCTGCTCCTGACTGTGTTTTGAGTCCTATAGGTCTTCCTTTACGTCCTG                         GAGAGCCCCTGTGTGTGTTCTATTCACGTTATGGCATATGCAAATTTGGTC
genomic: TCCTGCTCCTGACTGTGTTTTGAGTCCTATAGGTCTTCCTTTACGTCCTGtgagttgatt ... ttcctacaggGAGAGCCCCTGTGTGTGTTCTATTCACGTTATGGCATATGCAAATTTGGTC
EST: gi|6666366|gb|AW277825.1|AW277825
EST:     TCCTGCTCCTGACTGTGTTTTGAGTCCTATAGGTCTTCCTTTACGTCCTG                         GAGAGCCCCTGTGTGTGTTCTATTCACGTTATGGCATATGCAAATTTGGTC
genomic: TCCTGCTCCTGACTGTGTTTTGAGTCCTATAGGTCTTCCTTTACGTCCTGtgagttgatt ... ttcctacaggGAGAGCCCCTGTGTGTGTTCTATTCACGTTATGGCATATGCAAATTTGGTC