1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...gatgagaatatatgcaattcagtattgtcttcacactgatttgatatttttattgatttcggtacatgctaatagaggttgtgtcccattttcctacaggGAGAGCCCCTGTGTGTGTTCTATTCACGTTATGGCATATGCAAATTTGGTCCAAGCTGCAAGTTTGATCACCCAATGGGAGTCTTCACCTATAACATGTC
species | Glycine max |
transcript | GLYMA18G47660.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TCCTGCTCCTGACTGTGTTTTGAGTCCTATAGGTCTTCCTTTACGTCCTG GAGAGCCCCTGTGTGTGTTCTATTCACGTTATGGCATATGCAAATTTGGTCEST: gi|12690331|gb|BG156667.1|BG156667
genomic: TCCTGCTCCTGACTGTGTTTTGAGTCCTATAGGTCTTCCTTTACGTCCTGtgagttgatt ... ttcctacaggGAGAGCCCCTGTGTGTGTTCTATTCACGTTATGGCATATGCAAATTTGGTC
EST: TCCTGCTCCTGACTGTGTTTTGAGTCCTATAGGTCTTCCTTTACGTCCTG GAGAGCCCCTGTGTGTGTTCTATTCACGTTATGGCATATGCAAATTTGGTCEST: gi|6666366|gb|AW277825.1|AW277825
genomic: TCCTGCTCCTGACTGTGTTTTGAGTCCTATAGGTCTTCCTTTACGTCCTGtgagttgatt ... ttcctacaggGAGAGCCCCTGTGTGTGTTCTATTCACGTTATGGCATATGCAAATTTGGTC
EST: TCCTGCTCCTGACTGTGTTTTGAGTCCTATAGGTCTTCCTTTACGTCCTG GAGAGCCCCTGTGTGTGTTCTATTCACGTTATGGCATATGCAAATTTGGTC
genomic: TCCTGCTCCTGACTGTGTTTTGAGTCCTATAGGTCTTCCTTTACGTCCTGtgagttgatt ... ttcctacaggGAGAGCCCCTGTGTGTGTTCTATTCACGTTATGGCATATGCAAATTTGGTC
atttttattgatttcggtacatgctaatagaggttgtgtcccattttcctacaggGAGAGCCCCTGTGTGTGTTCTATTCACGTTATGGCATATGCAAATTTGGTCCAAGCTGCAAGTTTGATCACCCAATGGGAGTCTTCACCTATAACATGTC
tgctaat putative branch site (score: 2)
tgtcccattttcct putative PPT
tattgattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gatgagaatatatgcaattcagtattgtcttcacactgatttgatatttttattgatttcggtacatgctaatagaggttgtgtcccattttcctacaggGAGAGCCCCTGTGTGTGTTCTATTCACGTTATGGCATATGCAAATTTGGTCCAAGCTGCAAGTTTGATCACCCAATGGGAGTCTTCACCTATAACATGTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - tatgcaa
- - - - - - - - - - - - - - -ttcacac
- - - - - - - - - - - - - - - - - - tgatttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acatgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggttgtg