1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...atgtatgtagttaacattattgtcttgtagctagtttttctattaaaaaaatggttggacctaagcatttttaaatatctttcattgttttgtattccagTCAGCGAGCTGCAGGCCGCTTGGATCCACAAATGATTCCAAATTGAATTCTGAGAATATGGCAAAGCAGCAGAATGCTGTTTCATGCTTGGATTCCCCTC
species | Glycine max |
transcript | GLYMA18G47560.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GAAAAGATTCTATAAGTTTGTACCAGAAACCTAGCTTACCTGATAACAAG TCAGCGAGCTGCAGGCCGCTTGGATCCACAAATGATTCCAAATTGAATTCTEST: gi|192304069|gb|FG995313.1|FG995313
genomic: GAAAAGATTCTATAAGTTTGTACCAGAAACCTAGCTTACCTGATAACAAGgtaaagcttt ... tgtattccagTCAGCGAGCTGCAGGCCGCTTGGATCCACAAATGATTCCAAATTGAATTCT
EST: GAAAAGATTCTATAAGTTTGTACCAGAAACCTAGCTTACCTGATAACAAG TCAGCGAGCTGCAGGCCGCTTGGATCCACAAATGATTCCAAATTGAATTCTEST: gi|6454664|gb|AW185347.1|AW185347
genomic: GAAAAGATTCTATAAGTTTGTACCAGAAACCTAGCTTACCTGATAACAAGgtaaagcttt ... tgtattccagTCAGCGAGCTGCAGGCCGCTTGGATCCACAAATGATTCCAAATTGAATTCT
EST: GAAAAGATTCTATAAGTTTGTACCAGAAACCTAGCTTACCTGATAACAAG TCAGCGAGCTGCAGGCCGCTTGGATCCACAAATGATTCCAAATTGAATTCTEST: gi|8403467|gb|BE059101.1|BE059101
genomic: GAAAAGATTCTATAAGTTTGTACCAGAAACCTAGCTTACCTGATAACAAGgtaaagcttt ... tgtattccagTCAGCGAGCTGCAGGCCGCTTGGATCCACAAATGATTCCAAATTGAATTCT
EST: GAAAAGATTCTATAAGTTTGTACCAGAAACCTAGCTTACCTGATAACAAG TCAGCGAGCTGCAGGCCGCTTGGATCCACAAATGATTCCAAATTGAATTCT
genomic: GAAAAGATTCTATAAGTTTGTACCAGAAACCTAGCTTACCTGATAACAAGgtaaagcttt ... tgtattccagTCAGCGAGCTGCAGGCCGCTTGGATCCACAAATGATTCCAAATTGAATTCT
aaaaaatggttggacctaagcatttttaaatatctttcattgttttgtattccagTCAGCGAGCTGCAGGCCGCTTGGATCCACAAATGATTCCAAATTGAATTCTGAGAATATGGCAAAGCAGCAGAATGCTGTTTCATGCTTGGATTCCCCTC
tctttcattgtttt CT-rich tract
atttttaaatatcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgtatgtagttaacattattgtcttgtagctagtttttctattaaaaaaatggttggacctaagcatttttaaatatctttcattgttttgtattccagTCAGCGAGCTGCAGGCCGCTTGGATCCACAAATGATTCCAAATTGAATTCTGAGAATATGGCAAAGCAGCAGAATGCTGTTTCATGCTTGGATTCCCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
-tgtatgt
- - - - - - - - - - tgtcttg
- - - - - - - - - - - - - - - - - - - - - - aaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - -tggttgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctaagca