1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GCCGAAGGACGGGCACACTTTGAAAGAGTAGCAAATATGCAGGAGCCAGAAGATCCTACTAGCAAAGGCTATTATTTTGATGGGTTACTGTTGCTTGCCAggtacaatttattagctaaatttagggactgcctgaataagcttctttaaaagtacttctaagagaagaaagtaagaagaaaataatgatatgagttttt...
species | Glycine max |
transcript | GLYMA18G47550.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GATCCTACTAGCAAAGGCTATTATTTTTGATGGGTTACTGTTGCTTGCCA GCACTCTATTTGATGCAGGTCAAAAGGCCGAAGCTGCGAAGTACCTACGTCEST: gi|207847537|gb|GD819136.1|GD819136
genomic: GATCCTACTAGCAAAGGCTATTA-TTTTGATGGGTTACTGTTGCTTGCCAggtacaattt ... tggatatgcaGCACTCTATTTGATGCAGGTCAAAAGGCCGAAGCTGCGAAGTACCTACGTC
EST: AGATCCTACTAGCAAAGGCTATTATTTTGATGGGTTACTGTTGCTTACCA GCACTCTATTTGATGCAGGTCAAAAGGCCGAAGCTGCGAAGTACCTACGTCEST: gi|208291501|gb|GE089389.1|GE089389
genomic: AGATCCTACTAGCAAAGGCTATTATTTTGATGGGTTACTGTTGCTTGCCAggtacaattt ... tggatatgcaGCACTCTATTTGATGCAGGTCAAAAGGCCGAAGCTGCGAAGTACCTACGTC
EST: AGATCCTACTAGCAAAGGCTATTATTTTGATGGGTTACTGTTGCTTGCCA GCACTCTATTTGATGCAGGTCAAAAGGCCGAAGCTGCGAAGTACCTACGTCEST: gi|208210353|gb|GE002762.1|GE002762
genomic: AGATCCTACTAGCAAAGGCTATTATTTTGATGGGTTACTGTTGCTTGCCAggtacaattt ... tggatatgcaGCACTCTATTTGATGCAGGTCAAAAGGCCGAAGCTGCGAAGTACCTACGTC
EST: AGATCCTACTAGCAAAGGCTATTATTTTGATGGGTTACTGTTGCTTGCCA GCACTCTATTTGATGCAGGTCAAAAGGCCGAAGCTGCGAAGTACCTACGTCEST: gi|8826405|gb|BE210135.1|BE210135
genomic: AGATCCTACTAGCAAAGGCTATTATTTTGATGGGTTACTGTTGCTTGCCAggtacaattt ... tggatatgcaGCACTCTATTTGATGCAGGTCAAAAGGCCGAAGCTGCGAAGTACCTACGTC
EST: AGATCCTACTAGCAAAGGCTATTATTTTGATGGGTTACTGTTGCTTGCCA GCACTCTATTTGATGCAAGTCAAAAGGCCGAAGCTGCEST: gi|51344265|gb|CO984998.1|CO984998
genomic: AGATCCTACTAGCAAAGGCTATTATTTTGATGGGTTACTGTTGCTTGCCAggtacaattt ... tggatatgcaGCACTCTATTTGATGCAGGTCAAAAGGCCGAAGCTGC
EST: AGATCCTACTAGCAAAGGCTATTATTTTGATGGGTTACTGTTGCTTGCCA GCACTCTATTTGATGCAGGTCAAAAGGCCGAAGCTGCGAAGTACCTACGTCEST: gi|208219043|gb|GE019315.1|GE019315
genomic: AGATCCTACTAGCAAAGGCTATTATTTTGATGGGTTACTGTTGCTTGCCAggtacaattt ... tggatatgcaGCACTCTATTTGATGCAGGTCAAAAGGCCGAAGCTGCGAAGTACCTACGTC
EST: AGATCCTACTAGCAAAGGCTATTATTTTGATGGGTTACTGTTGCTTACCA GCACTCTATTTGATGCAGGTCAAAAGGCCGAAGCTGCGAAGTACCTACGTCEST: gi|208269608|gb|GE069468.1|GE069468
genomic: AGATCCTACTAGCAAAGGCTATTATTTTGATGGGTTACTGTTGCTTGCCAggtacaattt ... tggatatgcaGCACTCTATTTGATGCAGGTCAAAAGGCCGAAGCTGCGAAGTACCTACGTC
EST: AGATCCTACTAGCAAAGGCTATTATTTTGATGGGTTACTGTTGCTTGCCA GCACTCTATTTGATGCAGGTCAAAAGGCCGAAGCTGTGAAGTACCTACGTCEST: gi|208139071|gb|GD935611.1|GD935611
genomic: AGATCCTACTAGCAAAGGCTATTATTTTGATGGGTTACTGTTGCTTGCCAggtacaattt ... tggatatgcaGCACTCTATTTGATGCAGGTCAAAAGGCCGAAGCTGCGAAGTACCTACGTC
EST: AGATCCTACTAGCAAAGGCTATTATTTTGATGGGTTACTGTTGCTTGCCA GCACTCTATTTGATGCAGGTCAAAAGGCCGAAGCTGCGAAGTACCTACGTC
genomic: AGATCCTACTAGCAAAGGCTATTATTTTGATGGGTTACTGTTGCTTGCCAggtacaattt ... tggatatgcaGCACTCTATTTGATGCAGGTCAAAAGGCCGAAGCTGCGAAGTACCTACGTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCCGAAGGACGGGCACACTTTGAAAGAGTAGCAAATATGCAGGAGCCAGAAGATCCTACTAGCAAAGGCTATTATTTTGATGGGTTACTGTTGCTTGCCAggtacaatttattagctaaatttagggactgcctgaataagcttctttaaaagtacttctaagagaagaaagtaagaagaaaataatgatatgagttttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agaagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaaataa