1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
agtaagttgtcctttttagtttgttcagagtgagggagaaaaattggaaaggagacgctttgctatatttttaagctttatctctggttgatggtacattacatttaattccatctacaGACTAGCCCTTGATAAGGACCCTGACTATGTACGAGCTTTAGTTTTGATGGGACGGGTTCTATTGCTGAAACATGTAAATGATGAAGCTAATGAGTACTT
species | Glycine max |
transcript | GLYMA18G47550.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGTCCCATTTTTAAACAGTGATGATAAAGAAAGTGCAATTCCTTTACTAA AACTAGCCCTTGATAAGGACCCTGACTATGTACGAGCTTTAGTTTTGATGGEST: gi|51344265|gb|CO984998.1|CO984998
genomic: AGTCCCATTTTTAAACAGTGATGATAAAGAAAGTGCAATTCCTTTACTAAagtaagttgt ... tccatctacaGACTAGCCCTTGATAAGGACCCTGACTATGTACGAGCTTTAGTTTTGATGG
EST: AGTCCCATTTTTAAACAGTGATGATAAAGAAAGTGCAATTCCTTTACTAA AACTAGCCCTTGATAAGGACCCTGACTATGTACGAGCTTTAGTTTTGATGG
genomic: AGTCCCATTTTTAAACAGTGATGATAAAGAAAGTGCAATTCCTTTACTAAagtaagttgt ... tccatctacaGACTAGCCCTTGATAAGGACCCTGACTATGTACGAGCTTTAGTTTTGATGG
atatttttaagctttatctctggttgatggtacattacatttaattccatctacaGACTAGCCCTTGATAAGGACCCTGACTATGTACGAGCTTTAGTTTTGATGGGACGGGTTCTATTGCTGAAACATGTAAATGATGAAGCTAATGAGTACTT
atttaat putative branch site (score: 4)
ttccatct CT-rich tract
tacattacatttaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agtaagttgtcctttttagtttgttcagagtgagggagaaaaattggaaaggagacgctttgctatatttttaagctttatctctggttgatggtacattacatttaattccatctacaGACTAGCCCTTGATAAGGACCCTGACTATGTACGAGCTTTAGTTTTGATGGGACGGGTTCTATTGCTGAAACATGTAAATGATGAAGCTAATGAGTACTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC