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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGATCGCCAATGGAACTCCAAGGTTTCTGATTTTGGGCTTGCTAAGCTTTTATGTTCTGAGAATAGTTATGTCACAACTCGAGTGATGGGAACATTTGGGttagtatgattaagctaagcattatcctatctctctcttaccaaattataattagttttaagttcctgtatgattgcaatgtgtaagtggttccaaatttttaaaggtaaaatgatattgattctctcctttttctttttctgtagt

Basic information

species Glycine max
transcript GLYMA18G47170.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G47170.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G014366_T03 (Zea mays), 5'ss of exon 4
-TGATCGCCAATGGAACTCCAAGGTTTCTGATTTTGGGCTTGCTAAGCTTTTATGTTCTGAGAATAGTTATGTCACAACTCGAGTGATGGGAACATTTGGGttagtatgattaagctaagcattatcctatctctctcttaccaaattataattagttttaagt---tcctgt-atgattgcaatgtgtaagtggttccaaatttttaaaggtaaaatgatattgattctctcctttttctttttctgtagt
 ||| |  || |||||| | |  || || |||||||||||||| ||||| || || || ||||| || ||||| ||||| || || |||||||||||||||||||||     || |    |||  ||  ||| ||  || |    | || ||   |   ||  |   || |||  | | ||   | |    |  ||| ||                                                    
TTGACCAGCAGTGGAACGCTAGAGTATCCGATTTTGGGCTTGCAAAGCTATTGTGGTCAGAGAAAAGCTATGTTACAACCCGTGTTATGGGAACATTTGGgttagtagtgagaacccttccatcctc--atcgcta-ctcagtctactacaaacggagctagatcgatcttgtcgttactgagctattggtgctgttgcag---------------------------------------------------

upper sequence: GLYMA18G47170.1 (Glycine max), 5'ss of exon 4
lower sequence: AT1G01540.1 (Arabidopsis thaliana), 5'ss of exon 4
-TGATCGCCAATGGAACTCCAAGGTTTCTGATTTTGGGCTTGCTAAGCTTTTATGTTCTGAGAATAGTTATGTCACAACTCGAGTGATGGGAACATTTGGGttagtatgattaagctaagcattatcctatctctctcttaccaaattataattagttttaagttcctgtatgattgcaatgtgtaagtggttccaaatttttaaaggtaaaatgatattgattctctcctttttctttttctgtagt
 |||||||||||||||  | |||||||| |||||||| ||||||||||| ||  | |||||||  |||||||| || ||||| ||||||||||| || |||| |  |  ||||| || |         || ||||||| | | |  |   |   ||| || ||      | ||| |   | |   || |   |   |   |||   |||  | |  | | |                           
TTGATCGCCAATGGAATGCTAAGGTTTCGGATTTTGGACTTGCTAAGCTCTTGGGGTCTGAGAGCAGTTATGTGACTACTCGTGTGATGGGAACTTTCGGgtaa--actattaaactca--------ttaactctctcctgcaatctgcaaggcagtctttag---gaatgtgaatattagg---aaataactttta--ctttgtgggttgatttgtttag---------------------------

upper sequence: GLYMA18G47170.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv15s0046g02030.t01 (Vitis vinifera), 5'ss of exon 4
-TGATCGCCAATGGAACTCCAAGGTTTCTGATTTTGGGCTTGCTAAGCTTTTATGTTCTGAGAATAGTTATGTCACAACTCGAGTGATGGGAACATTTGGGttagtatgattaagctaagcattatcctatctctctcttaccaaattataattagttttaagttcctgtatgattgcaatgtgtaagtggttccaaatttttaaaggtaaaatgatattgattctctcctttttctttttctgtagt
 |||||||||||||||||| ||||| |||||||||||||| || ||||| |||||||||||||  |||||||| || ||||| |||||||||||||| ||||||||    ||    |  | | |       |  || | ||  |    ||| | ||    |  || |||     |  |||||  |     |                                                         
TTGATCGCCAATGGAACTCTAAGGTGTCTGATTTTGGGCTGGCAAAGCTCTTATGTTCTGAGATAAGTTATGTAACGACTCGTGTGATGGGAACATTCGGgttagtccatttccttttggtaatgaatcgaccttcacataaaatggcatattgaga---agatttctgatatttcccaatggctttccag---------------------------------------------------------

upper sequence: GLYMA18G47170.1 (Glycine max), 5'ss of exon 4
lower sequence: EFJ31013 (Selaginella moellendorffii), 5'ss of exon 4
-TGATCGCCAATGGAACTCCAAGGTTTCTGATTTTGGGCTTGCTAAGCTTTTATGTTCTGAGAATAGTTATGTCACAACTCGAGTGATGGGAACATTTGGGttagtatgattaagctaagcattatcctatctctctcttaccaaattataattagttttaagttcctgtatgattgcaatgtgtaagtggttccaaatttttaaaggtaaaatgatattgattctctcctttttctttttctgtagt
  ||  |  | |||||| | ||| | ||||| ||||| || || |||||| |  | || ||||| ||| |||||||||| |||||||||||||| ||||||| || |     || | || |   |     |  |  ||||      ||    ||  |||   ||  | |                                                                               
TGGAGGGGGACTGGAACGCGAAGATATCTGACTTTGGCCTCGCAAAGCTTCTGGGATCGGAGAAAAGTCATGTCACAACCCGAGTGATGGGAACGTTTGGgtaagca-agcaaatcgaaactccagatgcttacattctttttgtttttcccttt-tttctcgtcacag-------------------------------------------------------------------------------

upper sequence: GLYMA18G47170.1 (Glycine max), 5'ss of exon 4
lower sequence: EFJ34699 (Selaginella moellendorffii), 5'ss of exon 4
-TGATCGCCAATGGAACTCCAAGGTTTCTGATTTTGGGCTTGCTAAGCTTTTATGTTCTGAGAATAGTTATGTCACAACTCGAGTGATGGGAACATTTGGGttagtatgattaagctaagcattatcctatctctctcttaccaaattataattagttttaagttcctgtatgattgcaatgtgtaagtggttccaaatttttaaaggtaaaatgatattgattctctcctttttctttttctgtagt
  ||  |  | |||||| | ||| | ||||| ||||| || || |||||| |  | || ||||| ||| |||||||||| |||||||||||||| ||||||| || | |   || | || |   |    ||   |   ||      || |   |  |||   ||  | |                                                                               
TGGAGGGGGACTGGAACGCGAAGATATCTGACTTTGGCCTCGCAAAGCTTCTGGGATCGGAGAAAAGTCATGTCACAACCCGAGTGATGGGAACGTTTGGgtaagcacg-caaatcgaaactccag---atgcttacattctttgtttttcccttttttctcgtcacag-------------------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58018434|gb|CX705176.1|CX705176
EST:     TATGTTCTGAGAATAGTTATGTCACAACTCGAGTGATGGGAACATTTGGT                         TATGTTGCACCAGAATATGCATGCACCGGAATGCTAACTGAGAAGAGTGAT
genomic: TATGTTCTGAGAATAGTTATGTCACAACTCGAGTGATGGGAACATTTGGGttagtatgat ... tttctgtagtTATGTTGCACCAGAATATGCATGCACCGGAATGCTAACTGAGAAGAGTGAT