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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGCTGAGAAAGAATTTAAAGTAGAGGTAGAAGCAATTGGTCGAGTGCGACACAAAAATCTTGTTAGGTTGCTTGGATACTGTGTCGAGGGAGCCTACAGgtattgatttcttctcttaaaaactaaaaagaaaaaaattgatgctatcaattttgttcggtttgacaagatgtaagatttgaagtgtggcactgttttcacag

Basic information

species Glycine max
transcript GLYMA18G47170.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G47170.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G014366_T03 (Zea mays), 5'ss of exon 2
AAGCTGAGAAAGAATTTAAAGTAGAGGTAGAAGCAATTGGTCGAGTGCGACACAAAAATCTTGTTAGGTTGCTTGGATACTGTGTCGAGGGAGCCTACAGgtattgatttcttctcttaaaaactaaaaagaaaaaaattgatgctatcaatttt--gttcggtttgacaagatgtaagatttgaagtgtggcactgttttcacag---------
| || ||||| || || || || ||||| |||||||||||||| || || ||||||||||| || ||||||||||| ||||| || || || || ||||||||| |||  | | |    |   ||      |        | ||  | | | | |  ||| || ||  ||| |    |    |||    || ||||||  ||   |         
AGGCCGAGAAGGAGTTCAAGGTGGAGGTCGAAGCAATTGGTCGTGTTCGGCACAAAAATCTCGTCAGGTTGCTTGGTTACTGCGTAGAAGGTGCTTACAGgtat-gatggcatattgctatctcttcttc-attcggtccggtgacacctactctcagtttggattctcaataatggaagcctgattcctgtcactgtcgtctatgcttgaacag

upper sequence: GLYMA18G47170.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G317938_T01 (Zea mays), 5'ss of exon 2
AAGCTGAGAAAGAATTTAAAGTAGAGGTAGAAGCAATTGGTCGAGTGCGACACAAAAATCTTGTTAGGTTGCTTGGATACTGTGTCGAGGGAGCCTACAGgtattgatttct---------------tctcttaaaaactaaaaagaaaaa-aattgatgctatcaattttgttcggtttgacaagatgtaagatt--tgaagtgtggcactgttttcacag------------
| || ||||| || || || || ||||| |||||||| ||||| || || ||||||||||| || |||||||| || ||||| || ||||| || |||||||||   | |                 ||||||      |     || |   | ||| | || ||||||| |   ||||    | |||| ||| ||  |   || |  ||||  | |                 
AGGCCGAGAAGGAGTTCAAGGTGGAGGTGGAAGCAATCGGTCGTGTTCGGCACAAAAATCTCGTCAGGTTGCTCGGCTACTGCGTAGAGGGTGCTTACAGgtatgtgtgttggcaggcacattgcaatctcttcttcgttcggtggacacctagttgcttctctcaatttag---ggttctcaatgatggaagcttgcttctgtatatcactactatggtctatgcttgaacag

upper sequence: GLYMA18G47170.1 (Glycine max), 5'ss of exon 2
lower sequence: AT1G01540.1 (Arabidopsis thaliana), 5'ss of exon 2
AAGCTGAGAAAGAATTTAAAGTAGAGGTAGAAGCAATTGGTCGAGTGCGACACAAAAATCTTGTTAGGTTGCTTGGATACTGTGTCGAGGGAGCCTACAGgtattgatttcttctcttaaaaacta-----aaaagaaaaaaattgatgctatcaattt-tgttcggtttgacaagatgtaagatttgaagtgtggcactgttttcacag
|||| ||||| ||||| |||||||| || ||||  ||||| ||||| |||||||| |||||||||||| |  | || || || || || || || |||||||||  ||  |    ||   |                | ||||  ||||   | |  |  || | |||| |  |  ||                                
AAGCAGAGAAGGAATTCAAAGTAGAAGTGGAAGTCATTGGGCGAGTACGACACAAGAATCTTGTTAGGCTTTTAGGGTATTGCGTGGAAGGTGCATACAGgtatatataccgctgctcgtatctcttttccggtgttacaaaagcgatgtcgtgacctaatgctgggttcgttactatag------------------------------

upper sequence: GLYMA18G47170.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv15s0046g02030.t01 (Vitis vinifera), 5'ss of exon 2
AAGCTGAGAAAGAATTTAAAGTAGAGGTAGAAGCAATTGGTCGAGTGCGACACAAAAATCTTGTTAGGTTGCTTGGATACTGTGTCGAGGGAGCCTACAGgtattgatttcttctcttaaaaactaaaaagaaaaaaattgatgctatcaattttgttcggtttgacaagatgtaagatttgaagtgtggcactgttttcacag
|||||||||| ||||| ||||| ||||| ||||| || || || || || ||||| ||||||||||||||||| ||||||||||  |||||||| ||||||||||| |  |     |      |||||     | |    | |    | |   |         | |||   | | |  ||| |  |||     | || ||  ||
AAGCTGAGAAGGAATTCAAAGTGGAGGTTGAAGCCATAGGCCGGGTCCGGCACAAGAATCTTGTTAGGTTGCTGGGATACTGTGCTGAGGGAGCTTACAGgtattgctacccatcttctg---ctaaatcctgacactgggttttcttgaggatccaaaaaactaacattttttcatctttcatttgttttttttttgtc-tag