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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaatatgtcagtgtttgacaggagattttataagaaaaacttcattaactatcaagatagaaacacgacagccaagaaataaacatctgatgtgaaactaaattctaggtgatttttgaagtcaggaactaatgtcaataatataatttttatccttgttttttggtacataattcttattcttatttaatattagTCATTAGTCATCTTGATCATTTCATGGGGATTCACACCAGTTGTGCTCAAACAGTACTTCGAATGTTGGTGTTTTATTAACTTGTGGGGATTTGGTTTTA

Basic information

species Glycine max
transcript GLYMA18G46970.1
intron # 4
splice site 3'
intron type U2


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tataatttttatccttgttttttggtacataattcttattcttatttaatattagTCATTAGTCATCTTGATCATTTCATGGGGATTCACACCAGTTGTGCTCAAACAGTACTTCGAATGTTGGTGTTTTATTAACTTGTGGGGATTTGGTTTTA
                                           atttaat  putative branch site (score: 4)
                                ttcttattcttattt  CT-rich tract
                 ttttttggtacataat  TA-rich tract