1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gttagcttcaatcttctaccttaatctctctttattttattttattaattaatgatatacatatttttaatacagttgcacttagttgattctatagcttaccttttagctatatcttctcaatattcttattggtctttgttttgatattatatcatttagGGTATCAACTGGTTGCAAAGGGGAAGAAATACCTGTCTCTGCACTTTATCACTGAG
species | Glycine max |
transcript | GLYMA18G46970.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TTCTGGAACTGATGGCTCTGATTACTCCTACCGTATGGTAGTTGATTCAA GGTATCAACTGGTTGCAAAGGGGAAGAAATACCTGTCTCTGCACTTTATCAEST: gi|207816123|gb|GD786166.1|GD786166
genomic: TTCTGGAACTGATGGCTCTGATTACTCCTACCGTATGGTAGTTGATTCAAgttagcttca ... tatcatttagGGTATCAACTGGTTGCAAAGGGGAAGAAATACCTGTCTCTGCACTTTATCA
EST: TTCTGGAACTGATGGCTCTGATTACTCCTACCGTATGGTAGTTGATTCAA GGTATCAACTGGTTGCAAAGGGGAAGAAATACCTGTCTCTGCACTTTATCA
genomic: TTCTGGAACTGATGGCTCTGATTACTCCTACCGTATGGTAGTTGATTCAAgttagcttca ... tatcatttagGGTATCAACTGGTTGCAAAGGGGAAGAAATACCTGTCTCTGCACTTTATCA
agctatatcttctcaatattcttattggtctttgttttgatattatatcatttagGGTATCAACTGGTTGCAAAGGGGAAGAAATACCTGTCTCTGCACTTTATCACTGAG
ttttgat putative branch site (score: 4)
tttgttttgatattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagcttcaatcttctaccttaatctctctttattttattttattaattaatgatatacatatttttaatacagttgcacttagttgattctatagcttaccttttagctatatcttctcaatattcttattggtctttgttttgatattatatcatttagGGTATCAACTGGTTGCAAAGGGGAAGAAATACCTGTCTCTGCACTTTATCACTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA