Sequence
atgc intronic sequence ATGC exonic sequencetgtaagtttcttttaaaaaagtcctccagtctgtcagtaaaataggtgtttatatgatacttttccttgtacctttttttaacaGGTGAGTCCTATTGAATATGGGCATGTGCTGCTGATTCCACGGATTTTTGAGTGTTTACCTCAAAGGATTGACCATGCAAGCTTCTTGCTTGCACTTCAA
Basic information
species | Glycine max |
transcript | GLYMA18G10430.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA18G10430.1 (Glycine max), 3'ss of exon 4
lower sequence: AT5G55120.1 (Arabidopsis thaliana), 3'ss of exon 4
tgtaagtttcttttaaaaaagtcctccagtctgtcagtaaaataggtgtttatatgatacttttccttgtaccttttttta-acaGGTGAGTCCTATTGAATATGGGCATGTGCTGCTGATTCCACGGATTTTTGAGTGTTTACCTCAAAGGATTGACCATGCAAGCTTCTTGCTTGCACTTCAA-
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-gtaaggagttgttgct----tttaggagtctatt--ttcctttgctgattatctgagaactgaactcagaattcttttaacgcagGTGAGTCCGATTGAGTATGGGCATGTGTTGCTGATTCCTCGTGTTCTTGATTGCTTACCTCAAAGGATTGATCACAAAAGCCTTTTGCTTGCTCTTCAAA
upper sequence: GLYMA18G10430.1 (Glycine max), 3'ss of exon 4
lower sequence: AT4G26850.1 (Arabidopsis thaliana), 3'ss of exon 4
-tgtaagtttcttttaaaaaagtcc----tccagtctgtcagtaaaataggt---gtttatatgatactt-ttccttgtacctttttttaacaGGTGAGTCCTATTGAATATGGGCATGTGCTGCTGATTCCACGGATTTTTGAGTGTTTACCTCAAAGGATTGACCATGCAAGCTTCTTGCTTGCACTTCAA-
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gtaaagactcttgtgcagagagcttggttttttctttcttccttttattggtttcgctagcaaaagattaattctttattgttgtttttaacagGTTAGTCCGATAGAGTATGGCCATGTGCTGCTGATTCCTCGTGTTCTTGACTGCTTGCCTCAAAGGATCGATCACAAAAGCCTTTTGCTTGCAGTTCACA
upper sequence: GLYMA18G10430.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv19s0090g01000.t01 (Vitis vinifera), 3'ss of exon 4
-----tgtaagtttcttttaaaaaagtcctccagtctgtcagtaaaataggtgtttatatgatacttttccttgtacctttttttaacaGGTGAGTCCTATTGAATATGGGCATGTGCTGCTGATTCCACGGATTTTTGAGTGTTTACCTCAAAGGATTGACCATGCAAGCTTCTTGCTTGCACTTCAA-
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gtatgcatccacttctgttcttcatgttctt-ggagagtaatgagtatcag-gtcttaataacactgtttctgttgtcaatgattaacagGTTAGTCCTATTGAATATGGGCATGTGCTTCTAATCCCAAGGATTTTCGAGTGCTTGCCGCAGAGGATCGACCGCGAAAGCTTTTTGCTTGCCCTTGACAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|27446264|gb|CA953387.1|CA953387EST: CCAAATGCACCTATTGATGTAGAGAATTCTCCTAGTTTTGTTGCCATCAA TGTGAGTCCTATTGAATATGGGCATGTGCTGCTGATTCCACGGATTTTTGA
genomic: CCAAATGCACCTATTGATGTAGAGAATTCTCCTAGTTTTGTTGCCATCAAtgtaagtttc ... ttttttaacaGGTGAGTCCTATTGAATATGGGCATGTGCTGCTGATTCCACGGATTTTTGA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tctgtcagtaaaataggtgtttatatgatacttttccttgtacctttttttaacaGGTGAGTCCTATTGAATATGGGCATGTGCTGCTGATTCCACGGATTTTTGAGTGTTTACCTCAAAGGATTGACCATGCAAGCTTCTTGCTTGCACTTCAA
tacttttccttgtacc CT-rich tract
tttatatgatactttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tgtaagtttcttttaaaaaagtcctccagtctgtcagtaaaataggtgtttatatgatacttttccttgtacctttttttaacaGGTGAGTCCTATTGAATATGGGCATGTGCTGCTGATTCCACGGATTTTTGAGTGTTTACCTCAAAGGATTGACCATGCAAGCTTCTTGCTTGCACTTCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT