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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGAAGCTTCACCCTTTTCTCTGTTTCACGAAATTCCCAACCTTTCTCCACCACCCTGTCCAATAACTTCCATTCCCTCCTTCACCCATCTCCCAACAAGGtaaccgcacttcgaaaacgtgatcaaaatttggtttttcggtatttttagtagtgggggggtttatctagggttttagggtttattgaaaactctacagt...

Basic information

species Glycine max
transcript GLYMA18G10120.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298181120|gb|HO022559.1|HO022559
EST:     CACCCTGTCCAATAACTTCCATTCCCTCCTTCACCCATCTCCCAACAAGC                         TGATTCCGGTTCAAACCAATTTTCTGAATTCATCATTGACTTCGAGATTCG
genomic: CACCCTGTCCAATAACTTCCATTCCCTCCTTCACCCATCTCCCAACAAGGtaaccgcact ... atgttctagcTGATTCCGGTTCAAACCAATTTTCTGAATTCATCATTGACTTCGAGATTCG
EST: gi|17964026|gb|BM270767.1|BM270767
EST:     CACCCTGTCCAATAACTTCCATTCCCTCCTTCACCCATCTCCCAACAAGC                         TGATTCCGGTTCAAACCAATTTTCTGAATTCATCATTGACTTCGAGATTCG
genomic: CACCCTGTCCAATAACTTCCATTCCCTCCTTCACCCATCTCCCAACAAGGtaaccgcact ... atgttctagcTGATTCCGGTTCAAACCAATTTTCTGAATTCATCATTGACTTCGAGATTCG
EST: gi|21993599|gb|BQ785127.1|BQ785127
EST:     CACCCTGTCCAATAACTTCCATTCCCTCCTTCACCCATCTCCCAACAAGC                         TGATTCCGGTTCAAACCAATTTTCTGAATTCATCATTGACTTCGAGATTCG
genomic: CACCCTGTCCAATAACTTCCATTCCCTCCTTCACCCATCTCCCAACAAGGtaaccgcact ... atgttctagcTGATTCCGGTTCAAACCAATTTTCTGAATTCATCATTGACTTCGAGATTCG
EST: gi|15662071|gb|BI699442.1|BI699442
EST:     CACCCTGTCCAATAACTTCCATTCCCTCCTTCACCCATCTCCCAACAAGC                         TGATTCCGGTTCAAACCAATTTTCTGAATTCATCATTGACTTCGAGATTCG
genomic: CACCCTGTCCAATAACTTCCATTCCCTCCTTCACCCATCTCCCAACAAGGtaaccgcact ... atgttctagcTGATTCCGGTTCAAACCAATTTTCTGAATTCATCATTGACTTCGAGATTCG
EST: gi|7686143|gb|AW756791.1|AW756791
EST:     CACCCTGTCCAATAACTTCCATTCCCTCCTTCACCCATCTCCCAACAAGC                         TGATTCCGGTTCAAACCAATTTTCTGAATTCATCATTGACTTCGAGATTCG
genomic: CACCCTGTCCAATAACTTCCATTCCCTCCTTCACCCATCTCCCAACAAGGtaaccgcact ... atgttctagcTGATTCCGGTTCAAACCAATTTTCTGAATTCATCATTGACTTCGAGATTCG
EST: gi|151398178|gb|EV268056.1|EV268056
EST:     CACCCTGTCCAATAACTTCCATTCCCTCCTTCACCCATCTCCCAACAAGC                         TGATTCCGGTTCAAACCAATTTTCTGAATTCATCATTGACTTCGAGATTCG
genomic: CACCCTGTCCAATAACTTCCATTCCCTCCTTCACCCATCTCCCAACAAGGtaaccgcact ... atgttctagcTGATTCCGGTTCAAACCAATTTTCTGAATTCATCATTGACTTCGAGATTCG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CGAAGCTTCACCCTTTTCTCTGTTTCACGAAATTCCCAACCTTTCTCCACCACCCTGTCCAATAACTTCCATTCCCTCCTTCACCCATCTCCCAACAAGGtaaccgcacttcgaaaacgtgatcaaaatttggtttttcggtatttttagtagtgggggggtttatctagggttttagggtttattgaaaactctacagt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggggggg