1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...atcatccacttttttgtgtctgtatagaagtactgcacattgtaaatttatttctttactatttcatataattgtgactgtttccttgattcttttgaagTTCTATTGGGCTATGCAATTGGTGTCGCAACAAATTTTACCATCTTGAGTCAGATTATAGCATACCAAAAGCCTCAGGTTGGAAAGGAGAAGAAAACAAA
species | Glycine max |
transcript | GLYMA17G35700.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TTAGAGTATTCACCACCATCCAAGAAAGTGCACCAAAAAGTG TTCTATTGGGCTATGCAATTGGTGTCGCAACAAATTTTACCATCTTGAGTCEST: gi|6200808|gb|AW152908.1|AW152908
genomic: TTAGAGTATTCACCACCATCCAAGAAAGTGCACCAAAAAGTGgtaggcttgc ... tcttttgaagTTCTATTGGGCTATGCAATTGGTGTCGCAACAAATTTTACCATCTTGAGTC
EST: TTAGAGTATTCACCACCATCCAAGAAAGTGCACCAAAAAGTG TTCTATTGGGCTATGCAATTGGTGTCGCAACAAATTTTACCATCTTGAGTC
genomic: TTAGAGTATTCACCACCATCCAAGAAAGTGCACCAAAAAGTGgtaggcttgc ... tcttttgaagTTCTATTGGGCTATGCAATTGGTGTCGCAACAAATTTTACCATCTTGAGTC
atttatttctttactatttcatataattgtgactgtttccttgattcttttgaagTTCTATTGGGCTATGCAATTGGTGTCGCAACAAATTTTACCATCTTGAGTCAGATTATAGCATACCAAAAGCCTCAGGTTGGAAAGGAGAAGAAAACAAA
ccttgat putative branch site (score: 5)
tttccttgattctttt CT-rich tract
tttctttactatttca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atcatccacttttttgtgtctgtatagaagtactgcacattgtaaatttatttctttactatttcatataattgtgactgtttccttgattcttttgaagTTCTATTGGGCTATGCAATTGGTGTCGCAACAAATTTTACCATCTTGAGTCAGATTATAGCATACCAAAAGCCTCAGGTTGGAAAGGAGAAGAAAACAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- catccac
- - - - - - - -gtgtctg
- - - - - - - - - - - - - - - - -tgcacat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtttcc