1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...cttccatgctgctgagcattttagccgtattttataattattttggttactaggttctcattgcttaatatttttttgatgtggatatgatcttttgcagGCATCACAGCATGCAATCTTTCTCTTTGCAAGGATCCCACAAATATGGCAAAACTTTTCT
species | Glycine max |
transcript | GLYMA17G35700.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CTACTCTTTGAAGCTCTGTAT GCATCACAGCATGCAATCTTTCTCTTTGCAAGGATCCCACAAATATGGCAAEST: gi|6200808|gb|AW152908.1|AW152908
genomic: CTACTCTTTGAAGCTCTGTATgtgagtgaca ... tcttttgcagGCATCACAGCATGCAATCTTTCTCTTTGCAAGGATCCCACAAATATGGCAA
EST: CCACTATCTTAGCTGGTCAAATTGATCCTCTACTCTTTGAAGCTCTGTAT GCATCACAGCATGCAATCTTTCTCTTTGCAAGGATCCCACAAATATGGCAA
genomic: CCACTATCTTAGCTGGTCAAATTGATCCTCTACTCTTTGAAGCTCTGTATgtgagtgaca ... tcttttgcagGCATCACAGCATGCAATCTTTCTCTTTGCAAGGATCCCACAAATATGGCAA
gttactaggttctcattgcttaatatttttttgatgtggatatgatcttttgcagGCATCACAGCATGCAATCTTTCTCTTTGCAAGGATCCCACAAATATGGCAAAACTTTTCT
ttttgat putative branch site (score: 4)
tcttttgc putative PPT
attgcttaatattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttccatgctgctgagcattttagccgtattttataattattttggttactaggttctcattgcttaatatttttttgatgtggatatgatcttttgcagGCATCACAGCATGCAATCTTTCTCTTTGCAAGGATCCCACAAATATGGCAAAACTTTTCT
- -ccatgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gatgtgg