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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCACGCCGGTTGCAATGGGAGACTAGTGTGGCGGCACACGCCCTGGCTTGGTGCTCACGCGGCCAAAGGGCCGGTTAGGCCCTTGCGACGTGCCCTTCAGgtgaagttacctgccttgttacatacatgtatggctgccattgtaatgtatcgtggtcctgtttggataaacttctctataaatagttataggagaagaa...

Basic information

species Glycine max
transcript GLYMA17G35520.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G35520.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv18s0001g09450.t01 (Vitis vinifera), 5'ss of exon 2
TCACGCCGGTTGCAATGGGAGACTAGTGTGGCGGCACACGCCCTGGCTTGGTGCTCACGCGGCCAAAGGGCCGGTTAGGCCCTTGCGACGTGCCCTTCAGgtgaagttacctgccttgttacatacatgtatggct-gccattgtaatgtatcgtggtcctgtttggataaacttctctataaatagttataggagaagaa
||| || |||| ||||||||  || |||||| ||||||| || ||||| ||||| ||||| || |||||||| |||||||| || || || || ||||||||||| || ||||     |   ||      |||  | | ||||||  ||  |     |  |||||  ||||  || |  ||  ||  ||     ||     
TCATGCTGGTTCCAATGGGAATCTTGTGTGGAGGCACACACCATGGCTCGGTGCACACGCTGCAAAAGGGCCTGTTAGGCCTTTACGGCGAGCACTTCAGgtgaattttcctgtacattggaatctgatgatgctttgtcattgtcttgctt----attgtgttttaataa--ttttgcatccattctttctatag-----