Sequence
atgc intronic sequence ATGC exonic sequence...atcagtagatattatcattattatgccatgttaagcattctgttagatcacatttggaaaatgtgtgtgaatgagtattatcacttttttgatcttgtagGAGACTTCTTCTGCTCAGTACATATTGCAGCAGTACATTGCTGCCAGTGGAGGGCAGAGGCTTCAGAATTCGATTAACAATGCGTATGCCATGGGGAAGG
Basic information
species | Glycine max |
transcript | GLYMA17G35520.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA17G35520.1 (Glycine max), 3'ss of exon 1
lower sequence: AT1G27690.1 (Arabidopsis thaliana), 3'ss of exon 1
atcagtagatattatcatta-ttatgccatgttaagcattctgttagatcacatttg--gaaaatgtgtgtgaatgagtattatcacttttttgatcttgtagGAGACTTCTTCTGCTCAGTACATATTGCAGCAGTACATTGCTGCCAGTGGAGGGCAGAGGCTTCAGAATTCGATTAACAATGCGTATGCCATGGGGAAGG
||| |||| || | | | ||| || | | | | || || || | ||||| | ||| | | || || || |||||||||| ||||||||||||||| | |||||||| | ||||| ||||| || | |||||| | ||| | | |||| |||| ||||| |
--agaaagactgcgcaattaattgagatttatcaagttttatctctgctttaatgtgttgagggtaaagtctaatgactcttactaatacttgaatttt-cagGAGACTTCCTCTGCTCAGTACATACTTCAGCAGTATACGGCTGCATCAGGAGGTCAAAAGCTTCATAGTTCTGTGCAAAATGGATATGTTATGGGAAGAA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gatcacatttggaaaatgtgtgtgaatgagtattatcacttttttgatcttgtagGAGACTTCTTCTGCTCAGTACATATTGCAGCAGTACATTGCTGCCAGTGGAGGGCAGAGGCTTCAGAATTCGATTAACAATGCGTATGCCATGGGGAAGG
ttttgat putative branch site (score: 4)
cttttttg CT-rich tract
tattatcactttttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
atcagtagatattatcattattatgccatgttaagcattctgttagatcacatttggaaaatgtgtgtgaatgagtattatcacttttttgatcttgtagGAGACTTCTTCTGCTCAGTACATATTGCAGCAGTACATTGCTGCCAGTGGAGGGCAGAGGCTTCAGAATTCGATTAACAATGCGTATGCCATGGGGAAGG
- - - - - - - - - - -tatgcca
- - - - - - - - - - - - - - - - - gcattct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtgtgtg