Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tggttttatttggttgatactttacactgacaagcatgcaagatgataatttatttctgatcaattgtatcttacaagcgttctcttctgtgaaatttcaGGAAAATGGCAGTGGTACTATCAAAAGCAGCTCTTACAATAAGGATGATATAGGTCAAGTGACTCTGGATGATTACAATCCCATTGATCCAGTGCCAAGT

Basic information

species Glycine max
transcript GLYMA17G35460.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|12774385|gb|BG239312.1|BG239312
EST:     ACCAACTGTGATGATAAAGCCACATCGATTGCAGTAAGCAGGAAACTTAA                         GGAAAATGGCAGTGGTACTATCAAAAGCAGCTCTTACAATAAGGATGATAT
genomic: ACCAACTGTGATGATAAAGCCACATCGATTGCAGTAAGCAGGAAACTTAAggtatgaatg ... tgaaatttcaGGAAAATGGCAGTGGTACTATCAAAAGCAGCTCTTACAATAAGGATGATAT
EST: gi|18039434|gb|BM307728.1|BM307728
EST:     ACCAACTGTGATGATAAAGCCACATCGATTGCAGTAAGCAGGAAACTTAA                         GGAAAATGGCAGTGGTACTATCAAAAGCAGCTCTTACAATAAGGATGATAT
genomic: ACCAACTGTGATGATAAAGCCACATCGATTGCAGTAAGCAGGAAACTTAAggtatgaatg ... tgaaatttcaGGAAAATGGCAGTGGTACTATCAAAAGCAGCTCTTACAATAAGGATGATAT
EST: gi|22524796|gb|BU083607.1|BU083607
EST:     ACCAACTGTGATGATAAAGCCACATCGATTGCAGTAAGCAGGAAACTTAA                         GGAAAATGGCAGTGGTACTATCAAAAGCAGCTCTTACAATAAGGATGATAT
genomic: ACCAACTGTGATGATAAAGCCACATCGATTGCAGTAAGCAGGAAACTTAAggtatgaatg ... tgaaatttcaGGAAAATGGCAGTGGTACTATCAAAAGCAGCTCTTACAATAAGGATGATAT
EST: gi|13791639|gb|BG654230.1|BG654230
EST:     ACCAACTGTGATGATAAAGCCACATCGATTGCAGTAAGCAGGAAACTTAA                         GGAAAATGGCAGTGGTACTATCAAAAGCAGCTCTTACAAT
genomic: ACCAACTGTGATGATAAAGCCACATCGATTGCAGTAAGCAGGAAACTTAAggtatgaatg ... tgaaatttcaGGAAAATGGCAGTGGTACTATCAAAAGCAGCTCTTACAAT
EST: gi|24206041|gb|BU965294.1|BU965294
EST:     ACCAACTGTGATGATAAAGCCACATCGATTGCAGTAAGCAGGAAACTTAA                         GGAAAATGGCAGTGGTACTATCAAA-GCAGCTCTTACAATAAGGATGATAT
genomic: ACCAACTGTGATGATAAAGCCACATCGATTGCAGTAAGCAGGAAACTTAAggtatgaatg ... tgaaatttcaGGAAAATGGCAGTGGTACTATCAAAAGCAGCTCTTACAATAAGGATGATAT
EST: gi|17964721|gb|BM271452.1|BM271452
EST:     ACCAACTGTGATGATAAAGCCACATCGATTGCAGTAAGCAGGAAACTTAA                         GGAAAATGGCAGTGGTACTATCAAAAGCAGCTCTTACAATAAGGATGATAT
genomic: ACCAACTGTGATGATAAAGCCACATCGATTGCAGTAAGCAGGAAACTTAAggtatgaatg ... tgaaatttcaGGAAAATGGCAGTGGTACTATCAAAAGCAGCTCTTACAATAAGGATGATAT
EST: gi|151405125|gb|EV274939.1|EV274939
EST:     ACCAACTGTGATGATAAAGCCACATCGATTGCAGTAAGCAGGAAACTTAA                         GGAAAATGGCAGTGGTACTATCAAAAGCAGCTCTTACAATAAGGATGATAT
genomic: ACCAACTGTGATGATAAAGCCACATCGATTGCAGTAAGCAGGAAACTTAAggtatgaatg ... tgaaatttcaGGAAAATGGCAGTGGTACTATCAAAAGCAGCTCTTACAATAAGGATGATAT
EST: gi|18730497|gb|BM525910.1|BM525910
EST:     ACCAACTGTGATGATAAAGCCACATCGATTGCAGTAAGCAGGAAACTTAA                         GGAAAATGGCAGTGGTACTATCAAAAGCAGCTCTTACAATAAGGATGATAT
genomic: ACCAACTGTGATGATAAAGCCACATCGATTGCAGTAAGCAGGAAACTTAAggtatgaatg ... tgaaatttcaGGAAAATGGCAGTGGTACTATCAAAAGCAGCTCTTACAATAAGGATGATAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ataatttatttctgatcaattgtatcttacaagcgttctcttctgtgaaatttcaGGAAAATGGCAGTGGTACTATCAAAAGCAGCTCTTACAATAAGGATGATATAGGTCAAGTGACTCTGGATGATTACAATCCCATTGATCCAGTGCCAAGT
                       atcttac  putative branch site (score: 3)
                                   ttctcttctgt  putative PPT
     ttatttct  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tggttttatttggttgatactttacactgacaagcatgcaagatgataatttatttctgatcaattgtatcttacaagcgttctcttctgtgaaatttcaGGAAAATGGCAGTGGTACTATCAAAAGCAGCTCTTACAATAAGGATGATATAGGTCAAGTGACTCTGGATGATTACAATCCCATTGATCCAGTGCCAAGT

- - - - - - - - - - - - -actgaca
- - - - - - - - - - - - - - - - -gcatgca