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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAGATTTGCTAAATTTGAAGGATGCAATTAGCTCAGCAATGGATGTGATGCAGGCAATGGCATCCTCCATATGCCTATTGTCACCAAAGgtatgtgtttcttttgcctaacctggttttacagatgttgaatctcaattatacttgcgatgaagacatggtacaaaagtgttgttttatttttctagat...

Basic information

species Glycine max
transcript GLYMA17G35450.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G35450.1 (Glycine max), 5'ss of exon 6
lower sequence: AT5G43160.1 (Arabidopsis thaliana), 5'ss of exon 4
ACAGATTTGCTAAATTTGAAGGATGCAATTAGCTCAGCAATGGATGTGATGCAGGCAATGGCATCCTCCATATGCCTATTGTCACCAAAGgtatgtgtttcttttgcctaacctggttttacagatgttgaatctcaattatacttgcgatgaagacatggtacaaaagtgttgttttatttttctagat
  | || | | || | | |||||||| ||| | |||||| | ||||| ||||| ||||||||||| ||||||||| | |||   ||||||||   | ||  |||  |          ||||  |      |   || |||    ||    | |     |      ||||||       || |  |     
GTAAATGTACAAAGTGTTAAGGATGCCATTTGTTCAGCAGTTGATGTTATGCAAGCAATGGCATCTTCCATATGCTTGTTGCTGCCAAAGgtgactcttcttttctctcggataatgtttatggc--acaatcttctattgcgttt-tattcatattgtatcttcaaagtgaaagccaatatcccag---

upper sequence: GLYMA17G35450.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv18s0001g09260.t01 (Vitis vinifera), 5'ss of exon 4
ACAGATTTGCTAAATTTGAAGGATGCAATTAGCTCAGCAATGGATGTGATGCAGGCAATGGCATCCTCCATATGCCTATTGTCACCAAAGgt-atgtgtttcttttgcctaacctggttttacagatgttgaatctcaattatacttgcgatgaagacatggtacaaaagtgttgttttatttttctagat---
 ||||  | | ||||||||||||||||||| | |||||| | |||||||||||||||||||||||||| ||||||   |||| | ||||||| || |  || || |    |  ||  | |      ||||   | |   ||||| |   |||  |   ||  |    || ||       ||| | |||  |   
GCAGACATCCAAAATTTGAAGGATGCAATTTGTTCAGCAGTTGATGTGATGCAGGCAATGGCATCCTCAATATGCTCTTTGTTATCAAAGgtgatctcctttttcttttgactctcatgtcttgtctgttatgtttt--ttataatcttgatttatttat--tcattaattgggaaaaaattctgctaatttca