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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattttccttttggcttcttgtttataattaaataatgattatctaattattgatagtgtgtgacatagccagttactacttattatcatatttgggactaatatgaagagctctgtattttgttcagACAGATTTGCTAAATTTGAAGGATGCAATTAGCTCAGCAATGGATGTGATGCAGGCAATGGCATCCTCCATATGCCTATTGTCACCAAAG

Basic information

species Glycine max
transcript GLYMA17G35450.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G35450.1 (Glycine max), 3'ss of exon 5
lower sequence: AT5G43160.1 (Arabidopsis thaliana), 3'ss of exon 3
gtattttccttttggcttcttgtttataattaaataatgattatctaattattgatagtgtgtgacatagccagttactacttattatcatatttgggactaatatgaagagctctgt--attttgtt----cagACAGATTTGCTAAATTTGAAGGATGCAATTAGCTCAGCAATGGATGTGATGCAGGCAATGGCATCCTCCATATGCCTATTGTCACCAAAG
                                                     | | |  | |   |   | | ||| |  ||| |    | || || |   || |||      |||   ||  ||||    |||  | || | | || | | |||||||| ||| | |||||| | ||||| ||||| ||||||||||| ||||||||| | |||   ||||||
-----------------------------------------------------gtttggctattctact-caaattattttttagttatgtgttgggaaagcatgtgatccttgctgatgatcatgttatcgcagGTAAATGTACAAAGTGTTAAGGATGCCATTTGTTCAGCAGTTGATGTTATGCAAGCAATGGCATCTTCCATATGCTTGTTGCTGCCAAAG

upper sequence: GLYMA17G35450.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv18s0001g09260.t01 (Vitis vinifera), 3'ss of exon 3
gtattttccttttggcttcttgtttataattaaataatgattatctaat-tattgatagtgtgtgacatagccagttactacttattatcatatttgggactaatatgaagagctctgtattttgttcagACAGATTTGCTAAATTTGAAGGATGCAATTAGCTCAGCAATGGATGTGATGCAGGCAATGGCATCCTCCATATGCCTATTGTCACCAAAG
|||| |  || ||   |  || ||| ||||      ||| |||| | |  | |   | ||     |||| | || ||      | | || | |||     || || |   | |||   |||||   |||| ||||  | | ||||||||||||||||||| | |||||| | |||||||||||||||||||||||||| ||||||   |||| | |||||
gtatgtctctgttttatctttatttttaat------atg-ttatgtgacatttcagttgtccaacacattggcaattttcgggtttgataaaattc----cttattttttg-gctacctatttc-ctcagGCAGACATCCAAAATTTGAAGGATGCAATTTGTTCAGCAGTTGATGTGATGCAGGCAATGGCATCCTCAATATGCTCTTTGTTATCAAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttactacttattatcatatttgggactaatatgaagagctctgtattttgttcagACAGATTTGCTAAATTTGAAGGATGCAATTAGCTCAGCAATGGATGTGATGCAGGCAATGGCATCCTCCATATGCCTATTGTCACCAAAG
                       gactaat  putative branch site (score: 2)
                                             ttttgttc  putative PPT
     acttattatcatattt  TA-rich tract