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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAAGAAGAGAGAGAATAAACGAGAGACTAAGAATCCTACAGAATCTTGTCCCAAATGGAACCAAGgtaaatataatgtaacttttgtttttaatattgaagtcagtggaagccaaattcaatggagttgtgtattaatttcatggatggtcgtgtaaatgtag

Basic information

species Glycine max
transcript GLYMA17G35420.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G35420.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv18s0001g09210.t01 (Vitis vinifera), 5'ss of exon 3
AAAAGAAGAGAGAGAATAAACGAGAGACTAAGAATCCTACAGAATCTTGTCCCAAATGGAACCAAGgtaaata-taatgt-----aact-tttgtttttaat--attgaagtc-------agtggaagccaaattcaatggagt-tgtgtattaatttcatggatggtcgtgtaaatgtag---
|||||||| ||||||||||| ||| || | |||||| ||||||| ||||| || |||||||| |||||||  | | |  |     ||||   || |  | ||  ||||              |  |||   ||   |||| |   ||   | | |||||      | || | |   |||     
AAAAGAAGGGAGAGAATAAATGAGCGATTGAGAATCTTACAGAACCTTGTTCCTAATGGAACAAAGgtaagcaatgaactccaccaactacctgatcctcattcattggttcttcttcaagatcaaagttgaagaaaatgaaacctggaaactgatttctccacggatcttatct-tgtgacag