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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtaattaattaattaattaatcacattcaaatacaaaatcagtttttattttattttatttttgtccttatgtgatgtgcttgcttagtacagtttgtgtgtggtacttaatatatattacgtcttgaatcttgcagAAAAGAAGAGAGAGAATAAACGAGAGACTAAGAATCCTACAGAATCTTGTCCCAAATGGAACCAAG

Basic information

species Glycine max
transcript GLYMA17G35420.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G35420.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv18s0001g09210.t01 (Vitis vinifera), 3'ss of exon 2
gtatgtaattaattaattaattaatcacattcaaatacaaaatcagtttttattttattttatttttgtccttatgtgatgtgcttgcttagtacagtttgtgtgtggtacttaata-tatattacgtcttgaatcttgcagAAAAGAAGAGAGAGAATAAACGAGAGACTAAGAATCCTACAGAATCTTGTCCCAAATGGAACCAAG
                                                  ||    | |||    |  |||  | |  |        ||| | |   ||      |  |  ||  || |   || | | || |||||| ||||||||||| ||||||||||| ||| || | |||||| ||||||| ||||| || |||||||| |||
-------------------------------------------------gtaagaaactttgcagtactcccaaagaaa-------actttgcatttttcccccatactttttcttaatcctttccattttcaatctttcagAAAAGAAGGGAGAGAATAAATGAGCGATTGAGAATCTTACAGAACCTTGTTCCTAATGGAACAAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcttagtacagtttgtgtgtggtacttaatatatattacgtcttgaatcttgcagAAAAGAAGAGAGAGAATAAACGAGAGACTAAGAATCCTACAGAATCTTGTCCCAAATGGAACCAAG
                       acttaat  putative branch site (score: 4)
                      tacttaatatatatta  TA-rich tract