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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGGAAGTGTGCCGTTTGATTCCATCTTCCTCTAGTGACCACAAAAGGgtatgttttcttttcctcacttatttctgagtgcaaaacggtgttgtctctcagaactgagcactgaatcttaatgttgatctattttacctgtcgtttc...

Basic information

species Glycine max
transcript GLYMA17G35410.1
intron # 12
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17963168|gb|BM269920.1|BM269920
EST:     AGGGAAGTGTGCCGTTTGATTCCATCTTCCTCTAGTGACCACAAAAGG                         TTTCAGGATTTCATATCATACTTGAAGCAGAGGGATTGTGCTGGGGTTATT
genomic: AGGGAAGTGTGCCGTTTGATTCCATCTTCCTCTAGTGACCACAAAAGGgtatgttttc ... tgtcgaccagTTTCAGGATTTCATATCATACTTGAAGCAGAGGGATTGTGCTGGGGTTATT
EST: gi|19270973|gb|BM887229.1|BM887229
EST:     AGGGAAGTGTGCCGTTTGATTCCATCTTCCTCTAGTGACCACAAAAGG                         TTTCAGGATTTCATATCATACTTGAAGCAGAGGGATTGTGCTGGGGTTATT
genomic: AGGGAAGTGTGCCGTTTGATTCCATCTTCCTCTAGTGACCACAAAAGGgtatgttttc ... tgtcgaccagTTTCAGGATTTCATATCATACTTGAAGCAGAGGGATTGTGCTGGGGTTATT
EST: gi|193355617|gb|FK322960.1|FK322960
EST:     AGGGAAGTGTGCCGTTTGATTCCATCTTCCTCTAGTGACCACAGAAGG                         TTTCAGGATTTCATATCATACTTGAAGCAGAGGGATTGTGCTGGGGTTATT
genomic: AGGGAAGTGTGCCGTTTGATTCCATCTTCCTCTAGTGACCACAAAAGGgtatgttttc ... tgtcgaccagTTTCAGGATTTCATATCATACTTGAAGCAGAGGGATTGTGCTGGGGTTATT
EST: gi|6454744|gb|AW185427.1|AW185427
EST:     AGGGAAGTGTGCCGTTTGATTCCATCTTCCTCTAGTGACCACAAAAGG                         TTTCAGGATTTCATATCATACTTGAAGCAGAGGGATTGTGCTGGGGTTATT
genomic: AGGGAAGTGTGCCGTTTGATTCCATCTTCCTCTAGTGACCACAAAAGGgtatgttttc ... tgtcgaccagTTTCAGGATTTCATATCATACTTGAAGCAGAGGGATTGTGCTGGGGTTATT
EST: gi|22928227|gb|BU545366.1|BU545366
EST:     GAAGGGAAGTGTGCCGTTTGATTCCATCTTCCTCTAGTGACCACAAAAGG                         TTTCAGGATTTCATATCATACTTGAAGCAGAGGGATTGTGCTGGGGTTATT
genomic: GAAGGGAAGTGTGCCGTTTGATTCCATCTTCCTCTAGTGACCACAAAAGGgtatgttttc ... tgtcgaccagTTTCAGGATTTCATATCATACTTGAAGCAGAGGGATTGTGCTGGGGTTATT