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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAAAGTATCGGGTGGTGCTTGGTGATGGCACTGTTGTTGTGGAGACGCTGGAAGGAGGAGTTGAGTTTCACATGAAGGATGgtaataacgttgagttgtgctgttttttggatgaaatataatttcatttttcgtctcacaggttgtttgaccaaatatggtgctacttgtag

Basic information

species Glycine max
transcript GLYMA17G35210.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208264830|gb|GE062162.1|GE062162
EST:     TTGAGTTTCACATGAAGGATG                         GTCATCTTTTTCCTATATTGCCAAAAGTAATCATGACTATGACAAGGGGAG
genomic: TTGAGTTTCACATGAAGGATGgtaataacgt ... ctacttgtagGTCATCTTTTTCCTATATTGCCAAAAGTAATCATGACTATGACAAGGGGAG
EST: gi|208310158|gb|GE109396.1|GE109396
EST:     TGTTGTTGTGGAGACGCTGGAAGGAGGAGTTGAGTTTCACATGAAGGATG                         GTCATCTTTTTCCTATATTGCCAAAAGTAAATCATGACTATGACAAGGG
genomic: TGTTGTTGTGGAGACGCTGGAAGGAGGAGTTGAGTTTCACATGAAGGATGgtaataacgt ... ctacttgtagGTCATCTTTTTCCTATATTGCCAAAAGTAA-TCATGACTATGACAAGGG
EST: gi|207785330|gb|GD759081.1|GD759081
EST:     TGTTGTTGTGGAGACGCTGGAAGGAGGAGTTGAGTTTCACATGAAGGATG                         GTCATCTTTTTCCTATATTGCAAAAAGTAATCATGACTATGACAAGGGGAG
genomic: TGTTGTTGTGGAGACGCTGGAAGGAGGAGTTGAGTTTCACATGAAGGATGgtaataacgt ... ctacttgtagGTCATCTTTTTCCTATATTGCCAAAAGTAATCATGACTATGACAAGGGGAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TAAAGTATCGGGTGGTGCTTGGTGATGGCACTGTTGTTGTGGAGACGCTGGAAGGAGGAGTTGAGTTTCACATGAAGGATGgtaataacgttgagttgtgctgttttttggatgaaatataatttcatttttcgtctcacaggttgtttgaccaaatatggtgctacttgtag

- - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - -  TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGGATG