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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaataacgttgagttgtgctgttttttggatgaaatataatttcatttttcgtctcacaggttgtttgaccaaatatggtgctacttgtagGTCATCTTTTTCCTATATTGCCAAAAGTAATCATGACTATGACAAGGGGAGAGAAGGCTGAATTAATTCTCCAACCCCAGT

Basic information

species Glycine max
transcript GLYMA17G35210.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208264830|gb|GE062162.1|GE062162
EST:     TTGAGTTTCACATGAAGGATG                         GTCATCTTTTTCCTATATTGCCAAAAGTAATCATGACTATGACAAGGGGAG
genomic: TTGAGTTTCACATGAAGGATGgtaataacgt ... ctacttgtagGTCATCTTTTTCCTATATTGCCAAAAGTAATCATGACTATGACAAGGGGAG
EST: gi|208310158|gb|GE109396.1|GE109396
EST:     TGTTGTTGTGGAGACGCTGGAAGGAGGAGTTGAGTTTCACATGAAGGATG                         GTCATCTTTTTCCTATATTGCCAAAAGTAAATCATGACTATGACAAGGG
genomic: TGTTGTTGTGGAGACGCTGGAAGGAGGAGTTGAGTTTCACATGAAGGATGgtaataacgt ... ctacttgtagGTCATCTTTTTCCTATATTGCCAAAAGTAA-TCATGACTATGACAAGGG
EST: gi|207785330|gb|GD759081.1|GD759081
EST:     TGTTGTTGTGGAGACGCTGGAAGGAGGAGTTGAGTTTCACATGAAGGATG                         GTCATCTTTTTCCTATATTGCAAAAAGTAATCATGACTATGACAAGGGGAG
genomic: TGTTGTTGTGGAGACGCTGGAAGGAGGAGTTGAGTTTCACATGAAGGATGgtaataacgt ... ctacttgtagGTCATCTTTTTCCTATATTGCCAAAAGTAATCATGACTATGACAAGGGGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ataatttcatttttcgtctcacaggttgtttgaccaaatatggtgctacttgtagGTCATCTTTTTCCTATATTGCCAAAAGTAATCATGACTATGACAAGGGGAGAGAAGGCTGAATTAATTCTCCAACCCCAGT
     ttcattttt  TA-rich tract