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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAGAGCAGTGGCATCCTTTTACTGGGGAGAACTAAAGATAGTGTATCTCATCTCCAATGGTTGTTCAGTAACATTAACAATGCAAAATCTTCTTGTAAGgtgccttaaatacatgaaataatgaacttctattttctgtagtgtttagtcagtgaatctttgaaaacactctgaaaaacagcttaatatactttcatttgaattttaacattaactggatattttag

Basic information

species Glycine max
transcript GLYMA17G35030.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G35030.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv09s0054g00780.t01 (Vitis vinifera), 5'ss of exon 6
AGAGAGCAGTGGCATCCTTTTACTGGGGAGAACTAAAGATAGTGTATCTCATCTCCAATGGTTGTTCAGTAACATTAACAATGCAAAATCTTCTTGTAAGgtgcct--------------taaatacatgaaat--aatgaa-----cttct----attttc----tgtagtgtttagtcagtgaatc------tttgaaaacact-ctgaaaaacagcttaatatactttcatttgaatttt---aacattaactggatattttag----------------------
||| ||||||||  |  | ||| |||||||||| || || |||||| ||||||| || |||||||||||| |||| || || ||||||||    | |||||| |                | ||| |||  |||  ||| ||     || ||    |||||     |  ||| |||  ||| | ||        |  ||||| | |  ||||    |   | | || ||||  | ||  ||||   || || |  |  | || |  |                      
AGAAAGCAGTGGTCTTTTATTAATGGGGAGAACGAAGGAGAGTGTAGCTCATCTTCATTGGTTGTTCAGTGACATAAATAAAGCAAAATCCCTATCTAAGgtactcgtacttctgcttgatcaatccatataatgcaataaatactactcctgagcattttaggaatagagttttttatcaataaaaaacatgataggaaaatagtgttgaatggtacaatcagatgcttttgtgtgtttttttctaaaataatattaaaatctgtgttttatatatgggtgatcttag