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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatttttttagaggataaatataaagatcatcatatgtattttggtcctttataattatggattcttttaaaaaaagaaaaattgcaaatgtaccaaaaaaaagttttttaaacataagcagtgatattatctcatttttttcttgtcttttgcagGTAGATCTTGGGCTTATAAAGAAAAATCCAATGTGTCGTCTTGGAATTGACTAAAATGATTCACACTTGTGTCTTGTATTTTATCATTTATAAATAAATT

Basic information

species Glycine max
transcript GLYMA17G34950.1
intron # 18
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|214006803|gb|DB987671.1|DB987671
EST:     CGATGATACTGTATGGGATAGATAGCATCAGAGATCTCTTTGGACACAAG                         GTAGATCTTGGGCTTATAAAGAAAAATCCAATGTGTCGTCTTGGAATTGAC
genomic: CGATGATACTGTATGGGATAGATAGCATCAGAGATCTCTTTGGACACAAGgtattttttt ... tcttttgcagGTAGATCTTGGGCTTATAAAGAAAAATCCAATGTGTCGTCTTGGAATTGAC
EST: gi|13791361|gb|BG653952.1|BG653952
EST:     CGATGATACTGTATGGGATAGATAGCATCAGAGATCTCTTTGGACACAAG                         GTAGATCTTGGGCTTATAAAGAAAAATCCAATG
genomic: CGATGATACTGTATGGGATAGATAGCATCAGAGATCTCTTTGGACACAAGgtattttttt ... tcttttgcagGTAGATCTTGGGCTTATAAAGAAAAATCCAATG
EST: gi|4289670|gb|AI437504.1|AI437504
EST:     CGATGATACTGTATGGGATAGATAGCATCAGAGATCTCTTTGGACACAAG                         GTAGATCTTGGGCTTATAAAGAAAAATCCAATGTGTCGTCTTGGAATTGAC
genomic: CGATGATACTGTATGGGATAGATAGCATCAGAGATCTCTTTGGACACAAGgtattttttt ... tcttttgcagGTAGATCTTGGGCTTATAAAGAAAAATCCAATGTGTCGTCTTGGAATTGAC
EST: gi|214006134|gb|DB988751.1|DB988751
EST:     CGATGATACTGTATGGGATAGATAGCATCAGAGATCTCTTTGGACACAAG                         GTAGATCTTGGGCTTATAAAGAAAAATCCAATGTGTCGTCTTGGAATTGAC
genomic: CGATGATACTGTATGGGATAGATAGCATCAGAGATCTCTTTGGACACAAGgtattttttt ... tcttttgcagGTAGATCTTGGGCTTATAAAGAAAAATCCAATGTGTCGTCTTGGAATTGAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aagttttttaaacataagcagtgatattatctcatttttttcttgtcttttgcagGTAGATCTTGGGCTTATAAAGAAAAATCCAATGTGTCGTCTTGGAATTGACTAAAATGATTCACACTTGTGTCTTGTATTTTATCATTTATAAATAAATT
                        tattatctcatttttt  CT-rich tract
                       atattatctcattttt  TA-rich tract