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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATCGTGGAGGTTAAGGATCTTGGGCGAGGGGGAAGACACTCCCACTCTCACGACGGCGATGATGTGGAAAGTAGTGTTCGACACGTCGTCGTTTCACAGgtaatataatgtcccttgtttttacttacgttacgtaatctcttattcttgcttttcgttaaaatgaaattgaagagaaaacaaaacaaatttttactaa...

Basic information

species Glycine max
transcript GLYMA17G34660.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17964714|gb|BM271445.1|BM271445
EST:     ACGACGGCGATGATGTGGAAAGTAGTGTTCGACACGTCGTCGTTTCACAG                         GTATTGGAACTTGGGATTGTATCACATTCGATGATAATTGGGTTATCTCTA
genomic: ACGACGGCGATGATGTGGAAAGTAGTGTTCGACACGTCGTCGTTTCACAGgtaatataat ... tcgtatgtagGTATTGGAACTTGGGATTGTATCACATTCGATGATAATTGGGTTATCTCTA
EST: gi|20813016|gb|BQ297494.1|BQ297494
EST:     TCGACACGTCGTCGTTTCACAG                         GTATTGGAACTTGGGATTGTATCACATTCGATGATAATTGGGTTATCTCTA
genomic: TCGACACGTCGTCGTTTCACAGgtaatataat ... tcgtatgtagGTATTGGAACTTGGGATTGTATCACATTCGATGATAATTGGGTTATCTCTA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AATCGTGGAGGTTAAGGATCTTGGGCGAGGGGGAAGACACTCCCACTCTCACGACGGCGATGATGTGGAAAGTAGTGTTCGACACGTCGTCGTTTCACAGgtaatataatgtcccttgtttttacttacgttacgtaatctcttattcttgcttttcgttaaaatgaaattgaagagaaaacaaaacaaatttttactaa

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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaacaaaa