Sequence
atgc intronic sequence ATGC exonic sequence...atatatttttaagggtgcgtaaagattgttaaagtgttgttgattacaaacaatatacgcaacaaattatgcaaatttctgatatccaactcgtatgtagGTATTGGAACTTGGGATTGTATCACATTCGATGATAATTGGGTTATCTCTAGGAGTTTCACAAAGTCCCTGTACCATGAAACCCCTAATTGTGGCATTAT
Basic information
species | Glycine max |
transcript | GLYMA17G34660.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|17964714|gb|BM271445.1|BM271445EST: ACGACGGCGATGATGTGGAAAGTAGTGTTCGACACGTCGTCGTTTCACAG GTATTGGAACTTGGGATTGTATCACATTCGATGATAATTGGGTTATCTCTA
genomic: ACGACGGCGATGATGTGGAAAGTAGTGTTCGACACGTCGTCGTTTCACAGgtaatataat ... tcgtatgtagGTATTGGAACTTGGGATTGTATCACATTCGATGATAATTGGGTTATCTCTA
EST:
gi|20813016|gb|BQ297494.1|BQ297494EST: TCGACACGTCGTCGTTTCACAG GTATTGGAACTTGGGATTGTATCACATTCGATGATAATTGGGTTATCTCTA
genomic: TCGACACGTCGTCGTTTCACAGgtaatataat ... tcgtatgtagGTATTGGAACTTGGGATTGTATCACATTCGATGATAATTGGGTTATCTCTA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.acaaacaatatacgcaacaaattatgcaaatttctgatatccaactcgtatgtagGTATTGGAACTTGGGATTGTATCACATTCGATGATAATTGGGTTATCTCTAGGAGTTTCACAAAGTCCCTGTACCATGAAACCCCTAATTGTGGCATTAT
ttctgat putative branch site (score: 3)
aaattatgcaaattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
atatatttttaagggtgcgtaaagattgttaaagtgttgttgattacaaacaatatacgcaacaaattatgcaaatttctgatatccaactcgtatgtagGTATTGGAACTTGGGATTGTATCACATTCGATGATAATTGGGTTATCTCTAGGAGTTTCACAAAGTCCCTGTACCATGAAACCCCTAATTGTGGCATTAT
- - - - - - gggtgcg
- - - - - - - - - - - - - - - - - -gttgttg
- - - - - - - - - - - - - - - - - - - - - - -acaaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcaacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tatgcaa