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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTCATCATTTCTCTTCTCTCTTCACCCTTTTCATAGTTTTGCTTCACCACTCCAACGCTGACGTTGGCACCGCTTCTCGTTACTCCCCTCCATATTTACgtaagtgccctagctagctagcgctgcagtacgtacatatatataatgttgttacataagtaaatacgtatatcgatatatgtctaattaattgttgtatatgtatcctatatatatacag

Basic information

species Glycine max
transcript GLYMA17G12760.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120529491|gb|EH257625.1|EH257625
EST:     CTCCAACGCTGACGTTGGCACCGCTTCTCGTTACTCCCCTCCATATTTAC                         CATCCGGGTGCTACGGTACCGAAGCGACGCAGTTTCCGTCGAGCAATCTTT
genomic: CTCCAACGCTGACGTTGGCACCGCTTCTCGTTACTCCCCTCCATATTTACgtaagtgccc ... atatatacagCATCCGGGTGCTACGGTACCGAAGCGACGCAGTTTCCGTCGAGCAATCTTT
EST: gi|213618357|gb|DB967678.1|DB967678
EST:     CTCCAACGCTGACGTTGGCACCGCTTCTCGTTACTCCCCTCCATATTTAC                         CATCCGGGTGCTACGGTACCGAAGCGACGCAGTTTCCGTCGAGCAATCTTT
genomic: CTCCAACGCTGACGTTGGCACCGCTTCTCGTTACTCCCCTCCATATTTACgtaagtgccc ... atatatacagCATCCGGGTGCTACGGTACCGAAGCGACGCAGTTTCCGTCGAGCAATCTTT
EST: gi|5606551|gb|AI900649.1|AI900649
EST:     CTCCAACGCTGACGTTGGCACCGCTTCTCGTTACTCCCCTCCATATTTAC                         CATCCGGGTGCTACGGTACCGAAGCGACGCAGTTTCCGTCGAGCAATCTTT
genomic: CTCCAACGCTGACGTTGGCACCGCTTCTCGTTACTCCCCTCCATATTTACgtaagtgccc ... atatatacagCATCCGGGTGCTACGGTACCGAAGCGACGCAGTTTCCGTCGAGCAATCTTT
EST: gi|17153975|gb|BM143908.1|BM143908
EST:     CTCCAACGCTGACGTTGGCACCGCTTCTCGTTACTCCCCTCCATATTTAC                         CATCCGGGTGCTACGGTACCGAAGCGACGCAGTTTCCGTCGAGCAATCTTT
genomic: CTCCAACGCTGACGTTGGCACCGCTTCTCGTTACTCCCCTCCATATTTACgtaagtgccc ... atatatacagCATCCGGGTGCTACGGTACCGAAGCGACGCAGTTTCCGTCGAGCAATCTTT
EST: gi|10232131|gb|BE801019.1|BE801019
EST:     CTCCAACGCTGACGTTGGCACCGCTTCTCGTTACTCCCCTCCATATTTAC                         CATCCGGGTGCTACGGTACCGAAGCGACGCAGTTTCCGTCGAGCAATCTTT
genomic: CTCCAACGCTGACGTTGGCACCGCTTCTCGTTACTCCCCTCCATATTTACgtaagtgccc ... atatatacagCATCCGGGTGCTACGGTACCGAAGCGACGCAGTTTCCGTCGAGCAATCTTT