Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|120529491|gb|EH257625.1|EH257625EST: CTCCAACGCTGACGTTGGCACCGCTTCTCGTTACTCCCCTCCATATTTAC CATCCGGGTGCTACGGTACCGAAGCGACGCAGTTTCCGTCGAGCAATCTTT
genomic: CTCCAACGCTGACGTTGGCACCGCTTCTCGTTACTCCCCTCCATATTTACgtaagtgccc ... atatatacagCATCCGGGTGCTACGGTACCGAAGCGACGCAGTTTCCGTCGAGCAATCTTT
EST:
gi|213618357|gb|DB967678.1|DB967678EST: CTCCAACGCTGACGTTGGCACCGCTTCTCGTTACTCCCCTCCATATTTAC CATCCGGGTGCTACGGTACCGAAGCGACGCAGTTTCCGTCGAGCAATCTTT
genomic: CTCCAACGCTGACGTTGGCACCGCTTCTCGTTACTCCCCTCCATATTTACgtaagtgccc ... atatatacagCATCCGGGTGCTACGGTACCGAAGCGACGCAGTTTCCGTCGAGCAATCTTT
EST:
gi|5606551|gb|AI900649.1|AI900649EST: CTCCAACGCTGACGTTGGCACCGCTTCTCGTTACTCCCCTCCATATTTAC CATCCGGGTGCTACGGTACCGAAGCGACGCAGTTTCCGTCGAGCAATCTTT
genomic: CTCCAACGCTGACGTTGGCACCGCTTCTCGTTACTCCCCTCCATATTTACgtaagtgccc ... atatatacagCATCCGGGTGCTACGGTACCGAAGCGACGCAGTTTCCGTCGAGCAATCTTT
EST:
gi|17153975|gb|BM143908.1|BM143908EST: CTCCAACGCTGACGTTGGCACCGCTTCTCGTTACTCCCCTCCATATTTAC CATCCGGGTGCTACGGTACCGAAGCGACGCAGTTTCCGTCGAGCAATCTTT
genomic: CTCCAACGCTGACGTTGGCACCGCTTCTCGTTACTCCCCTCCATATTTACgtaagtgccc ... atatatacagCATCCGGGTGCTACGGTACCGAAGCGACGCAGTTTCCGTCGAGCAATCTTT
EST:
gi|10232131|gb|BE801019.1|BE801019EST: CTCCAACGCTGACGTTGGCACCGCTTCTCGTTACTCCCCTCCATATTTAC CATCCGGGTGCTACGGTACCGAAGCGACGCAGTTTCCGTCGAGCAATCTTT
genomic: CTCCAACGCTGACGTTGGCACCGCTTCTCGTTACTCCCCTCCATATTTACgtaagtgccc ... atatatacagCATCCGGGTGCTACGGTACCGAAGCGACGCAGTTTCCGTCGAGCAATCTTT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cgtatatcgatatatgtctaattaattgttgtatatgtatcctatatatatacagCATCCGGGTGCTACGGTACCGAAGCGACGCAGTTTCCGTCGAGCAATCTTTTTGCGGCGGCGGGAGATGGAATATGGGATAACGGAGCTGCGTGTGGGAG
aattaat putative branch site (score: 3)
taattaattgttgtat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaagtgccctagctagctagcgctgcagtacgtacatatatataatgttgttacataagtaaatacgtatatcgatatatgtctaattaattgttgtatatgtatcctatatatatacagCATCCGGGTGCTACGGTACCGAAGCGACGCAGTTTCCGTCGAGCAATCTTTTTGCGGCGGCGGGAGATGGAATATGGGATAACGGAGCTGCGTGTGGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC