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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTTAGAGTTGAATCGATTGAGGACAACACTTGGCGTAAAATAAAGTTCAGACTTTTTGTGGCAAGGGATGTTTTCCTTGTTTTTCTTGCAGTACAAACTgtgagcattcttaatattccttatccttcatatttaatgattatgttttcattgtttatattaagccatcccaaagagattttaattttgtttagaagct...

Basic information

species Glycine max
transcript GLYMA17G12750.4
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G12750.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv11s0016g04730.t01 (Vitis vinifera), 5'ss of exon 5
TCTTAGAGTTGAATCGATTGAGGACAACACTTGGCGTAAAATAAAGTTCAGACTTTTTGTGGCAAGGGATGTTTTCCTTGTTTTTCTTGCAGTACAAACTgtgagcattcttaatattccttatccttcatatttaatgattatgttttcattgtttatattaagccatc--ccaaagagattttaattttgtttagaagct--
||||  ||||| ||   | || |||||| |||||||||| ||||||||||||||||||||||| || |||||||||||||| ||| | || ||||||||||||||     | ||  || | || |    | ||||  |    || || | ||| |  || ||||   |       | || || |  | || |    | | ||  
TCTTCAAGTTGCATTATTCGAAGACAACTCTTGGCGTAAGATAAAGTTCAGACTTTTTGTGGCCAGAGATGTTTTCCTTGTATTTTTGGCTGTACAAACTgtgagttcagtgaaatttgcgtaac----aaatttcctatcaatcttcttattttgaattttaaagtagtagttcatgacatctggaattaggggtgcaacttg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151409807|gb|EV279615.1|EV279615
EST:     GACTTTTTGTGGCAAGGGATGTTTTCCTTGTTTTTCTTGCAGTACAAACT                         GTGATTGCAGCTATTGGTGGCTTTGCATACATCATGGACAAAGATGGTTCC
genomic: GACTTTTTGTGGCAAGGGATGTTTTCCTTGTTTTTCTTGCAGTACAAACTgtgagcattc ... atttttccagGTGATTGCAGCTATTGGTGGCTTTGCATACATCATGGACAAAGATGGTTCC
EST: gi|58025010|gb|CX711751.1|CX711751
EST:     GACTTTTTGTGGCAAAGGATGTTTTCC-TGTTTTTCTGGCAGTACAAACT                         GTGATTGCAGCTATTGGTGGCTTTGCATACATCATGGACAAAGATGGTTCC
genomic: GACTTTTTGTGGCAAGGGATGTTTTCCTTGTTTTTCTTGCAGTACAAACTgtgagcattc ... atttttccagGTGATTGCAGCTATTGGTGGCTTTGCATACATCATGGACAAAGATGGTTCC