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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...attttgtgatgtatctgtctatttgtttggcatatattgtcatattgtgtaatgttcatttaggactttatctaatctatgttctattgaatttttccagGTGATTGCAGCTATTGGTGGCTTTGCATACATCATGGACAAAGATGGTTCCTTCAGGAACTCGTTTGATGATGGTTGGGATAGGATACTGTCAAGGCATC

Basic information

species Glycine max
transcript GLYMA17G12750.4
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G12750.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv11s0016g04730.t01 (Vitis vinifera), 3'ss of exon 5
attttgtgatg-tatc--tgtctatttgtttggcatatattgtcatattgtgtaatgttcatt-taggactttatcta-atctatgttctattgaatttttccagGTGATTGCAGCTATTGGTGGCTTTGCATACATCATGGACAAAGATGGTTCCTTCAGGAACTCGTTTGATGATGGTTGGGATAGGATACTGTCAAGGCATC
 ||| ||| || || |  ||   || | |||| ||   |||  || | |   |    ||| ||  |   || |  ||| |||||     |       |||||||||| || |  ||||| ||||| ||||||||||||||||||||||||||  | |||||||| |||||   ||||||||||||| | ||| |||| |||||||
ttttagtgttgctaccactgcagatctctttgtca---att--caaagtccatccctttctttgcaaccctcttcctatatctaaaggatgcatctgttttccagGTCATCGGTGCTATGGGTGGATTTGCATACATCATGGACAAAGATGGGGCTTTCAGGAATTCGTTCAGTGATGGTTGGGATCGAATATTGTCCAGGCATC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151409807|gb|EV279615.1|EV279615
EST:     GACTTTTTGTGGCAAGGGATGTTTTCCTTGTTTTTCTTGCAGTACAAACT                         GTGATTGCAGCTATTGGTGGCTTTGCATACATCATGGACAAAGATGGTTCC
genomic: GACTTTTTGTGGCAAGGGATGTTTTCCTTGTTTTTCTTGCAGTACAAACTgtgagcattc ... atttttccagGTGATTGCAGCTATTGGTGGCTTTGCATACATCATGGACAAAGATGGTTCC
EST: gi|58025010|gb|CX711751.1|CX711751
EST:     GACTTTTTGTGGCAAAGGATGTTTTCC-TGTTTTTCTGGCAGTACAAACT                         GTGATTGCAGCTATTGGTGGCTTTGCATACATCATGGACAAAGATGGTTCC
genomic: GACTTTTTGTGGCAAGGGATGTTTTCCTTGTTTTTCTTGCAGTACAAACTgtgagcattc ... atttttccagGTGATTGCAGCTATTGGTGGCTTTGCATACATCATGGACAAAGATGGTTCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtgtaatgttcatttaggactttatctaatctatgttctattgaatttttccagGTGATTGCAGCTATTGGTGGCTTTGCATACATCATGGACAAAGATGGTTCCTTCAGGAACTCGTTTGATGATGGTTGGGATAGGATACTGTCAAGGCATC
                        atctaat  putative branch site (score: 3)
                                              tttttcc  putative PPT
                                    ttctattgaattttt  TA-rich tract