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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagttgtcctctgttctaagttttgatttgataaatggatgatcaagtgtttgcttacatgatcttatgtagGTGGTCATTATGCTCGTTATTGATAGAGAGAATGACCGTGCTCTATTGGCTAAACGACCGATGCGTATAGCTCGATTGTATACCTGCTTATCAGGTTTCA

Basic information

species Glycine max
transcript GLYMA17G12550.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192297500|gb|FG989880.1|FG989880
EST:     AATGTTCAAATGATTCATGCAAGAAGAGGATATATCCACGTGTTGACCCA                         GTGGTCATTATGCTCGTTATTGATAGAGAGAATGACCGTGCTCTATTGGCT
genomic: AATGTTCAAATGATTCATGCAAGAAGAGGATATATCCACGTGTTGACCCAgttagttgtc ... tcttatgtagGTGGTCATTATGCTCGTTATTGATAGAGAGAATGACCGTGCTCTATTGGCT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aagttttgatttgataaatggatgatcaagtgtttgcttacatgatcttatgtagGTGGTCATTATGCTCGTTATTGATAGAGAGAATGACCGTGCTCTATTGGCTAAACGACCGATGCGTATAGCTCGATTGTATACCTGCTTATCAGGTTTCA
                                  tgcttac  putative branch site (score: 2)
     ttgatttgataaat  TA-rich tract