1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...cataattatcattaaggagtcaaatttatggttatcaccgtttgtttgcccgttatcaaattattgtaatagtgaattagtgcatgatactggtggccagGCTAAGGCACTGCTGGAATGGCATAATTTTTCACGATTTTGTGGCCATTGTGGAGAGAAAACAGTCCCAATGGAAGCTGGGAGACGGAAGAAATGTTCAA
species | Glycine max |
transcript | GLYMA17G12550.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CAGACTGGTCGGATTTGCAACTGATGGGAAACTTGGCTATTGCTGGTCAT GCTAAGGCACTGCTGGAATGGCATAATTTTTCACGATTTTGTGGCCATTGTEST: gi|208060741|gb|GD856677.1|GD856677
genomic: CAGACTGGTCGGATTTGCAACTGATGGGAAACTTGGCTATTGCTGGTCATgtaagttcat ... tggtggccagGCTAAGGCACTGCTGGAATGGCATAATTTTTCACGATTTTGTGGCCATTGT
EST: CAGACTGGTCGGATTTGCAACTGATGGGAAACTTGGCTATTGCTGGTCAT GCTAAGGCACTGCTGGAATGGCATAATTTTTCACGATTTTGTGGCCATTGTEST: gi|193419835|gb|FK381903.1|FK381903
genomic: CAGACTGGTCGGATTTGCAACTGATGGGAAACTTGGCTATTGCTGGTCATgtaagttcat ... tggtggccagGCTAAGGCACTGCTGGAATGGCATAATTTTTCACGATTTTGTGGCCATTGT
EST: CAGACTGGTCGGATTTGCAACTGATGGGAAACTTGGCTATTGCTGGTCAT GCTAAGGCACTGCTGGAATGGCATAATTTTTCACGATTTTGTGGCCATTGTEST: gi|207704145|gb|GD686345.1|GD686345
genomic: CAGACTGGTCGGATTTGCAACTGATGGGAAACTTGGCTATTGCTGGTCATgtaagttcat ... tggtggccagGCTAAGGCACTGCTGGAATGGCATAATTTTTCACGATTTTGTGGCCATTGT
EST: CAGACTGGTCGGATTTGCAACTGATGGGAAACTTGGCTATTGCTGGTCAT GCTAAGGCACTGCTGGAATGGCATAATTTTTCACGATTTTGTGGCCATTGTEST: gi|208273214|gb|GE072768.1|GE072768
genomic: CAGACTGGTCGGATTTGCAACTGATGGGAAACTTGGCTATTGCTGGTCATgtaagttcat ... tggtggccagGCTAAGGCACTGCTGGAATGGCATAATTTTTCACGATTTTGTGGCCATTGT
EST: CAGACTGGTCGGATTTGCAACTGATGGGAAACTTGGCTATTGCTGGTCAT GCTAAGGCACTGCTGGAATGGCATAATTTTTCACGATTTTGTGGCCATTGTEST: gi|208090815|gb|GD886620.1|GD886620
genomic: CAGACTGGTCGGATTTGCAACTGATGGGAAACTTGGCTATTGCTGGTCATgtaagttcat ... tggtggccagGCTAAGGCACTGCTGGAATGGCATAATTTTTCACGATTTTGTGGCCATTGT
EST: CAGACTGGTCGGATTTGCAACTGATGGGAAACTTGGCTATTGCTGGTCAT GCTAAGGCACTGCTGGAATGGCATAATTTTTTCACGATTTTGTGGCCATTGEST: gi|193526924|gb|FK485080.1|FK485080
genomic: CAGACTGGTCGGATTTGCAACTGATGGGAAACTTGGCTATTGCTGGTCATgtaagttcat ... tggtggccagGCTAAGGCACTGCTGGAATGGCATAATTTTT-CACGATTTTGTGGCCATTG
EST: CAGACTGGTCGGATTTGCAACTGATGGGAAACTTGGCTATTGCTGGTCAT GCTAAGGCACTGCTGGAATGGCATAATTTTTCACGATTTTGTGGCCATTGT
genomic: CAGACTGGTCGGATTTGCAACTGATGGGAAACTTGGCTATTGCTGGTCATgtaagttcat ... tggtggccagGCTAAGGCACTGCTGGAATGGCATAATTTTTCACGATTTTGTGGCCATTGT
ttgcccgttatcaaattattgtaatagtgaattagtgcatgatactggtggccagGCTAAGGCACTGCTGGAATGGCATAATTTTTCACGATTTTGTGGCCATTGTGGAGAGAAAACAGTCCCAATGGAAGCTGGGAGACGGAAGAAATGTTCAA
ttatcaaattattgta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cataattatcattaaggagtcaaatttatggttatcaccgtttgtttgcccgttatcaaattattgtaatagtgaattagtgcatgatactggtggccagGCTAAGGCACTGCTGGAATGGCATAATTTTTCACGATTTTGTGGCCATTGTGGAGAGAAAACAGTCCCAATGGAAGCTGGGAGACGGAAGAAATGTTCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcatgat