Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|9984815|gb|BE658923.1|BE658923EST: TGCCCAAGCTTGTTCCAATTAATNNNAAGGACAACCACATTTCTTTCCAA TGTGAAAGCATAGCAGCGGTGGAAAAAAGACTGCAGCAAATGAAGATAGAG
genomic: TGCCCAAGCTTGTTCCAATTAATCCTAAGGACAACCACATTTCTTTCCAAgtattttttt ... actgttgtagTGTGAAAGCATAGCAGCGGTGGAAAAA-GACTGCAGCAAATGAAGATAGAG
EST:
gi|6201099|gb|AW153199.1|AW153199EST: TGCCCAAGCTTGTTCCAATTAATCCTAAGGACAACCACATTTCTTTCCAA TGTGAAAGCATAGCAGCGGTGGAAAAAAGACTGCAGCAAATGAAGATAGAG
genomic: TGCCCAAGCTTGTTCCAATTAATCCTAAGGACAACCACATTTCTTTCCAAgtattttttt ... actgttgtagTGTGAAAGCATAGCAGCGGTGGAAAAA-GACTGCAGCAAATGAAGATAGAG
EST:
gi|22539894|gb|BU089737.1|BU089737EST: TGCCCAAGCTTGTTCCAATTAATCCTAAGGACAACCACATTTCTTTCCAA TGTGAAAGCATAGCAGCGGTGGAAAAAAGACTGCAGCAAATGAAGATAGAG
genomic: TGCCCAAGCTTGTTCCAATTAATCCTAAGGACAACCACATTTCTTTCCAAgtattttttt ... actgttgtagTGTGAAAGCATAGCAGCGGTGGAAAAA-GACTGCAGCAAATGAAGATAGAG
EST:
gi|17023793|gb|BM094827.1|BM094827EST: TGCCCAAGCTTGTTCCAATTAATCCTAAGGACAACCACATTTCTTTCCAA TGTGAAAGCATAGCAGCGGTGGAAAAAAGACTGCAGCAAATGAAGATAGAG
genomic: TGCCCAAGCTTGTTCCAATTAATCCTAAGGACAACCACATTTCTTTCCAAgtattttttt ... actgttgtagTGTGAAAGCATAGCAGCGGTGGAAAAA-GACTGCAGCAAATGAAGATAGAG
EST:
gi|11274675|gb|BF325012.1|BF325012EST: TGCCCAAGCTTGTTCCAATTAATCCTAAGGACAACCACATTTCTTTCCAA TGTGAAAGCATAGCAGCGGTGGAAAAAAGACTGCAGCAAATGAAGATAGAG
genomic: TGCCCAAGCTTGTTCCAATTAATCCTAAGGACAACCACATTTCTTTCCAAgtattttttt ... actgttgtagTGTGAAAGCATAGCAGCGGTGGAAAAA-GACTGCAGCAAATGAAGATAGAG
EST:
gi|163923492|gb|EH039721.1|EH039721EST: TGCCCAAGCTTGTTCCAATTAATCCTAAGGACAACCACATTTCTTTCCAA TGTGAAAGCATAGCAGCGGTGGAAAAAAGACTGCAGCAAATGAAGATAGAG
genomic: TGCCCAAGCTTGTTCCAATTAATCCTAAGGACAACCACATTTCTTTCCAAgtattttttt ... actgttgtagTGTGAAAGCATAGCAGCGGTGG-AAAAAGACTGCAGCAAATGAAGATAGAG
EST:
gi|37997631|gb|CF809220.1|CF809220EST: TGCCCAAGCTTGTTCCAATTAATCCTAAGGACAACCACATTTCTTTCCAA TGTGAAAGCATAGCAGCGGTGGAAAAAAGACTGCAGCAAATGAAGATAGAG
genomic: TGCCCAAGCTTGTTCCAATTAATCCTAAGGACAACCACATTTCTTTCCAAgtattttttt ... actgttgtagTGTGAAAGCATAGCAGCGGTGGAAAAA-GACTGCAGCAAATGAAGATAGAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CAATTATGGCATTGGAATACACCTTCTTCAATCAGAAGACCCAGAAGGCATGCCCAAGCTTGTTCCAATTAATCCTAAGGACAACCACATTTCTTTCCAAgtatttttttctctatcttcctataatcatttaaacttaaacgtatagtcatattatgtgtgtaactgcatacttactgaacgaattgtgcactgttgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT