Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|197661886|gb|FD480295.1|FD480295EST: GTACATTATCAGACTCAAG GAGTTACAAGATAGTGTGGCCCAAGTTAAGGGTTCGCGGGAGGAGATGATG
genomic: GTACATTATCAGACTCAAGgtactctttc ... gaatctacagGAGTTACAAGATAGTGTGGCCCAAGTTAAGGGTTCGCGGGAAGAGATGATG
EST:
gi|9258084|gb|BE346231.1|BE346231EST: TCAACACCTTCTTCGTTGAGAAGGAGGAAGAGTACATTATCAGACTCAAG GAGTTACAAGATAGTGTGGCCCAAGTTAAGGGTTCGCGGGAAGAGATGATG
genomic: TCAACACCTTCTTCGTTGAGAAGGAGGAAGAGTACATTATCAGACTCAAGgtactctttc ... gaatctacagGAGTTACAAGATAGTGTGGCCCAAGTTAAGGGTTCGCGGGAAGAGATGATG
EST:
gi|20811661|gb|BQ296139.1|BQ296139EST: TCAACATCTTCTTCGTTGAGAAGGAGGAAGAGTACATTATCAGACTCAAG GAGTTACAAGATAGTGTGGCCCAAGTTAAGGGTTCGAGGGAAGAGATGATG
genomic: TCAACACCTTCTTCGTTGAGAAGGAGGAAGAGTACATTATCAGACTCAAGgtactctttc ... gaatctacagGAGTTACAAGATAGTGTGGCCCAAGTTAAGGGTTCGCGGGAAGAGATGATG
EST:
gi|13481700|gb|BG511043.1|BG511043EST: TCAACACCTTCTTCGTTGAGAAGGAGGAAGAGTACATTATCAGACTCAAG GAGTTACAAGATAGTGTGGCCCAAGTTAAGGGTTCGAGGGAAGAGATGATG
genomic: TCAACACCTTCTTCGTTGAGAAGGAGGAAGAGTACATTATCAGACTCAAGgtactctttc ... gaatctacagGAGTTACAAGATAGTGTGGCCCAAGTTAAGGGTTCGCGGGAAGAGATGATG
EST:
gi|23728057|gb|BU762070.1|BU762070EST: TCAACACCTTCTTCGTTGAGAAGGAGGAAGAGTACATTATCAGACTCAAG GAGTTACAAGATAGTGTGGCCCAAGTTAAGGGTTCGAGGGAAGAGATGATG
genomic: TCAACACCTTCTTCGTTGAGAAGGAGGAAGAGTACATTATCAGACTCAAGgtactctttc ... gaatctacagGAGTTACAAGATAGTGTGGCCCAAGTTAAGGGTTCGCGGGAAGAGATGATG
EST:
gi|10234737|gb|BE803625.1|BE803625EST: TCAACACCTTCTTCGTTGAGAAGGAGGAAGAGTACATTATCAGACTCAAG GAGTTACAAGATAGTGTGGCCCAAGTTAAGGGTTCGAGGGAAGAGATGATG
genomic: TCAACACCTTCTTCGTTGAGAAGGAGGAAGAGTACATTATCAGACTCAAGgtactctttc ... gaatctacagGAGTTACAAGATAGTGTGGCCCAAGTTAAGGGTTCGCGGGAAGAGATGATG
EST:
gi|22541765|gb|BU091608.1|BU091608EST: TCAACACCTTCTTCGTTGAGAAGGAGGAAGAGTACATTATCAGACTCAAG GAGTTACAAGATAGTGTGGCCCAAGTTAAGGGTTCGAGGGAAGAGATGATG
genomic: TCAACACCTTCTTCGTTGAGAAGGAGGAAGAGTACATTATCAGACTCAAGgtactctttc ... gaatctacagGAGTTACAAGATAGTGTGGCCCAAGTTAAGGGTTCGCGGGAAGAGATGATG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GAAGGAGGAGAGCGACTTCCGGAACCTGCTGGAGAATGAACTCGACAAATTCAACACCTTCTTCGTTGAGAAGGAGGAAGAGTACATTATCAGACTCAAGgtactctttctatcaatgttttgttgagttgcgtcaagatctgtttctttttcgattctttaggattccttcaattcaatggtaaataactaaatattaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA