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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCGCCGGGGACGAATCTATGTGATTTGCTCTGGGAACCCTAAGCACAAGCAACGACAGGGCATGGCAACATTTGCAAGTGAAGGCCCATCTCGACCAGTgtatgtgtttttctttttcctggttttgaattgccatatggtgtggagaaattgtagaaccaacactaactattgtttttagggatatcgtattttaact...

Basic information

species Glycine max
transcript GLYMA17G12290.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G12290.2 (Glycine max), 5'ss of exon 2
lower sequence: Vv11s0016g05390.t01 (Vitis vinifera), 5'ss of exon 2
AGCGCCGGGGACGAATCTATGTGATTTGCTCTGGGAACCCTAAGCACAAGCAACGACAGGGCATGGCAACATTTGCAAGTGAAGGCCCATCTCGACCAGTgtatgtgtttttctttttcctggttttgaattgccatatggtgtggagaaattgtagaaccaacactaactattgtttttagggatatcgtattttaact-
| || || || ||| | |||||  | ||| | |  || || ||||||||||||||||| |||||| ||||||||||   |||||||||   ||  ||| ||||||  ||||  |    |    | ||   ||  ||| | | || |      |||  | |       ||  |||    |||  | |   | ||| | |   
AACGTCGTGGGCGAGTATATGTACTATGCACAGCCAATCCCAAGCACAAGCAACGACAAGGCATGTCAACATTTGCCCATGAAGGCCCTCTTCCTCCAATgtatgcattttcttcaagctctatctttc-ttttcattttgagttgttcttgtgtgcaccatgggtgaagaatttaggttactgctgaggcattgtcaaaa
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17020758|gb|BM091792.1|BM091792
EST:     CAACGACAGGGCATGGCAACATTTGCAAGTGAAGGCCCATCTCGACCAGT                         GTCCTCGGAAACAAGTAGCTGGAAGATGGGGATAAAGCCTGCTCAAATTGC
genomic: CAACGACAGGGCATGGCAACATTTGCAAGTGAAGGCCCATCTCGACCAGTgtatgtgttt ... atcatttcagGTCCTCGGAAACAAGTAGCTGGAAGATGGGGATAAAGCCTGCTCAAATTGC
EST: gi|208279256|gb|GE079245.1|GE079245
EST:     CAACGACAGGGCATGGCAACATTTGCAAGTGAAGGCCCATCTCGACCAGT                         GTCCTCGGAAACAAGTAGCTGGAAGATGGGGATAAAGCCTGCTCAAATTGC
genomic: CAACGACAGGGCATGGCAACATTTGCAAGTGAAGGCCCATCTCGACCAGTgtatgtgttt ... atcatttcagGTCCTCGGAAACAAGTAGCTGGAAGATGGGGATAAAGCCTGCTCAAATTGC
EST: gi|298191145|gb|HO038624.1|HO038624
EST:     CAACGACAGGGCATGGCAACATTTGCAAGTGAAGGCCCATCTCGACCAGT                         GTCCTCGGAAACAAGTAGCTGGAAGATGGGGATAAAGCCTGCTCAAATTGC
genomic: CAACGACAGGGCATGGCAACATTTGCAAGTGAAGGCCCATCTCGACCAGTgtatgtgttt ... atcatttcagGTCCTCGGAAACAAGTAGCTGGAAGATGGGGATAAAGCCTGCTCAAATTGC
EST: gi|208178546|gb|GD977827.1|GD977827
EST:     CAACGACAGGGCATGGCAACATTTGCAAGTGAAGGCCCATCTCGACCAGT                         GTCCTCGGAAACAAGTAGCTGGAAGATGGGGATAAAGCCTGCTCAAATTGC
genomic: CAACGACAGGGCATGGCAACATTTGCAAGTGAAGGCCCATCTCGACCAGTgtatgtgttt ... atcatttcagGTCCTCGGAAACAAGTAGCTGGAAGATGGGGATAAAGCCTGCTCAAATTGC
EST: gi|193657812|gb|FK601475.1|FK601475
EST:     CAACGACAGGGCATGGCAACATTTGCAAGTGAAGGCCCATCTCGACCAGT                         GTCCTCGGAAACAAGTAGCTGGAAGATGGGGATAAAGCCTGCTCAAATTGC
genomic: CAACGACAGGGCATGGCAACATTTGCAAGTGAAGGCCCATCTCGACCAGTgtatgtgttt ... atcatttcagGTCCTCGGAAACAAGTAGCTGGAAGATGGGGATAAAGCCTGCTCAAATTGC
EST: gi|207817208|gb|GD788847.1|GD788847
EST:     CAACGACAGGGCATGGCAACATTTGCAAGTGAAGGCCCATCTCGACCAGT                         GTCCTCGGAAACAAGTAGCTGGAAGATGGGGATGAAGCCTGCTCAAATTGC
genomic: CAACGACAGGGCATGGCAACATTTGCAAGTGAAGGCCCATCTCGACCAGTgtatgtgttt ... atcatttcagGTCCTCGGAAACAAGTAGCTGGAAGATGGGGATAAAGCCTGCTCAAATTGC
EST: gi|19934906|gb|BQ079936.1|BQ079936
EST:     CAACGACAGGGCATGGCAACATTTGCAAGTGAAGGCCCATCTCGACCAGT                         GTCCTCGGAAACAAGTAGCTGGAAGATGGGGATAAAGCCTGCTCAAATTGC
genomic: CAACGACAGGGCATGGCAACATTTGCAAGTGAAGGCCCATCTCGACCAGTgtatgtgttt ... atcatttcagGTCCTCGGAAACAAGTAGCTGGAAGATGGGGATAAAGCCTGCTCAAATTGC
EST: gi|14125779|gb|BG790217.1|BG790217
EST:     CAACGACAGGGCATGGCAACATTTGCAAGTGAAGGCCCATCTCGACCAGT                         GTCCTCGGAAACAAGTAGCTGGAAGATGGGGATAAAGCCTGCTCAAATTGC
genomic: CAACGACAGGGCATGGCAACATTTGCAAGTGAAGGCCCATCTCGACCAGTgtatgtgttt ... atcatttcagGTCCTCGGAAACAAGTAGCTGGAAGATGGGGATAAAGCCTGCTCAAATTGC
EST: gi|208132013|gb|GD928966.1|GD928966
EST:     CAACGACAGGGCATGGCAACATTTGCAAGTGAAGGCCCATCTCGACCAGT                         GTCCTCGGAAACAAGTAGCTGGAAGATGGGGATAAAGCCTGCTCAAATTGC
genomic: CAACGACAGGGCATGGCAACATTTGCAAGTGAAGGCCCATCTCGACCAGTgtatgtgttt ... atcatttcagGTCCTCGGAAACAAGTAGCTGGAAGATGGGGATAAAGCCTGCTCAAATTGC
EST: gi|208140946|gb|GD935260.1|GD935260
EST:     CAACGACAGGGCATGGCAACATTTGCAAGTGAAGGCCCATCTCGACCAGT                         GTCCTCGGAAACAAGTAGCTGGAAGATGGGGATAAAGCCTGCTCAAATTGC
genomic: CAACGACAGGGCATGGCAACATTTGCAAGTGAAGGCCCATCTCGACCAGTgtatgtgttt ... atcatttcagGTCCTCGGAAACAAGTAGCTGGAAGATGGGGATAAAGCCTGCTCAAATTGC
EST: gi|13181351|gb|BG352752.1|BG352752
EST:     CAACGACAGGGCATGGCAACATTTGCAAGTGAAGGCCCATCTCGACCAGT                         GTCCTCGGAAACAAGTAGCTGGAAGATGGGGATAAAGCCTGCTCAAATTGC
genomic: CAACGACAGGGCATGGCAACATTTGCAAGTGAAGGCCCATCTCGACCAGTgtatgtgttt ... atcatttcagGTCCTCGGAAACAAGTAGCTGGAAGATGGGGATAAAGCCTGCTCAAATTGC
EST: gi|208325897|gb|GE124549.1|GE124549
EST:     CAACGACAGGGCATGGCAACATTTGCAAGTGAAGGCCCATCTCGACCAGT                         GTCCTCGGAAACAAGTAGCTGGAAGATGGGGATAAAGCCTGCTCAAATTGC
genomic: CAACGACAGGGCATGGCAACATTTGCAAGTGAAGGCCCATCTCGACCAGTgtatgtgttt ... atcatttcagGTCCTCGGAAACAAGTAGCTGGAAGATGGGGATAAAGCCTGCTCAAATTGC
EST: gi|208113477|gb|GD912922.1|GD912922
EST:     CAACGACAGGGCATGGCAACATTTGCAAGTGAAGGCCCATCTCGACCAGT                         GTCCTCGGAAACAAGTAGCTGGAAGATGGGGATAAAGCCTGCTCAAATTGC
genomic: CAACGACAGGGCATGGCAACATTTGCAAGTGAAGGCCCATCTCGACCAGTgtatgtgttt ... atcatttcagGTCCTCGGAAACAAGTAGCTGGAAGATGGGGATAAAGCCTGCTCAAATTGC
EST: gi|193714440|gb|FK655011.1|FK655011
EST:     CAACGACAGGGCATGGCAACATTTGCAAGTGAAGGCCCATCTCGACCAGT                         GTCCTCGGAAACAAGTAGCTGGAAGATGGGGATAAAGCCTGCTCAAATTGC
genomic: CAACGACAGGGCATGGCAACATTTGCAAGTGAAGGCCCATCTCGACCAGTgtatgtgttt ... atcatttcagGTCCTCGGAAACAAGTAGCTGGAAGATGGGGATAAAGCCTGCTCAAATTGC
EST: gi|208289613|gb|GE086760.1|GE086760
EST:     CAACGACAGGGCATGGCAACATTTGCAAGTGAAGGCCCATCTCGACCAGT                         GTCCTCGGAAACAAGTAGCTGGAAGATGGGGATAAAGCCTGCTCAAATTGC
genomic: CAACGACAGGGCATGGCAACATTTGCAAGTGAAGGCCCATCTCGACCAGTgtatgtgttt ... atcatttcagGTCCTCGGAAACAAGTAGCTGGAAGATGGGGATAAAGCCTGCTCAAATTGC
EST: gi|208246649|gb|GE044317.1|GE044317
EST:     CATCTCGACCAGT                         GTCCTCGGAAACAAGTAGCTGGAAGATGGGGATAAAGCCTGCTCAAATTGC
genomic: CATCTCGACCAGTgtatgtgttt ... atcatttcagGTCCTCGGAAACAAGTAGCTGGAAGATGGGGATAAAGCCTGCTCAAATTGC
EST: gi|9820852|gb|BE556362.1|BE556362
EST:     CAACGACAGGGCATGGCAACATTTGCAAGTGAAGGCCCATCTCGACCAGT                         GTCCTCGGAAACAAGTAGCTGGAAGATGGGGATAAAGCCTGCTCAAATTGC
genomic: CAACGACAGGGCATGGCAACATTTGCAAGTGAAGGCCCATCTCGACCAGTgtatgtgttt ... atcatttcagGTCCTCGGAAACAAGTAGCTGGAAGATGGGGATAAAGCCTGCTCAAATTGC
EST: gi|208134708|gb|GD927433.1|GD927433
EST:     CAACGACAGGGCATGGCAACATTTGCAAGTGAAGGCCCATCTCGACCAGT                         GTCCTCGGAAACAAGTAGCTGGAAGAT-GGGATAAAGCCTGCTCAAATTGC
genomic: CAACGACAGGGCATGGCAACATTTGCAAGTGAAGGCCCATCTCGACCAGTgtatgtgttt ... atcatttcagGTCCTCGGAAACAAGTAGCTGGAAGATGGGGATAAAGCCTGCTCAAATTGC
EST: gi|193361131|gb|FK323899.1|FK323899
EST:     CAACGACAGGGCATGGCAACATTTGCAAGTGAAGGCCCATCTCGACCAGT                         GTCCTCGGAAACAAGTAGCTGGAAGATGGGGATAAAGCCTGCTCAAATTGC
genomic: CAACGACAGGGCATGGCAACATTTGCAAGTGAAGGCCCATCTCGACCAGTgtatgtgttt ... atcatttcagGTCCTCGGAAACAAGTAGCTGGAAGATGGGGATAAAGCCTGCTCAAATTGC
EST: gi|193413627|gb|FK379990.1|FK379990
EST:     CAACGACAGGGCATGGCAACATTTGCAAGTGAAGGCCCATCTCGACCAGT                         GTCCTCGGAAACAAGTAGCTGGAAGATGGGGATAAAGCCTGCTCAAATTGC
genomic: CAACGACAGGGCATGGCAACATTTGCAAGTGAAGGCCCATCTCGACCAGTgtatgtgttt ... atcatttcagGTCCTCGGAAACAAGTAGCTGGAAGATGGGGATAAAGCCTGCTCAAATTGC
EST: gi|193346943|gb|FK310918.1|FK310918
EST:     CAACGACA-GGCATGGCAACATTTGCAAGTGAAGGCCCATCTCGACCAGT                         GTCCTCGGAAACAAGTAGCTGGAAGATGGGGATAAAGCCTGCTCAAATTGC
genomic: CAACGACAGGGCATGGCAACATTTGCAAGTGAAGGCCCATCTCGACCAGTgtatgtgttt ... atcatttcagGTCCTCGGAAACAAGTAGCTGGAAGATGGGGATAAAGCCTGCTCAAATTGC
EST: gi|7640110|gb|AW734418.1|AW734418
EST:     CAACGACAGGGCATGGCAACATTTGCAAGTGAAGGCCCATCTCGACCAGT                         GTCCTCGGAAACAAGTAGCTGGAAGATGGGGATAAAGCCTGCTCAAATTGC
genomic: CAACGACAGGGCATGGCAACATTTGCAAGTGAAGGCCCATCTCGACCAGTgtatgtgttt ... atcatttcagGTCCTCGGAAACAAGTAGCTGGAAGATGGGGATAAAGCCTGCTCAAATTGC
EST: gi|193313062|gb|FK279619.1|FK279619
EST:     CAACGACAGGGCATGGCAACATTTGCAAGTGAAGGCCCATCTCGACCAGT                         GTCCTCGGAAACAAGTAGCTGGAAGATGGGGATAAAGCCTGCTCAAATTGC
genomic: CAACGACAGGGCATGGCAACATTTGCAAGTGAAGGCCCATCTCGACCAGTgtatgtgttt ... atcatttcagGTCCTCGGAAACAAGTAGCTGGAAGATGGGGATAAAGCCTGCTCAAATTGC