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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCGCTTCTGGAATCTCGTCATAGTTCTTTCAGTTGCCATATACCCTCTCTCTTTACCTCTCAGACACTACAAGgttcgtctttttcccatgttttaatttttaattttatttctagcattttgtgccccaagtatccattttctttctttcattattttcgattcttagataa...

Basic information

species Glycine max
transcript GLYMA17G12290.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17020758|gb|BM091792.1|BM091792
EST:     TTCTTTCAGTTGCCATATACCCTCTCTCTTTACCTCTCAGACACTACAAG                         AAGCCATGAAGGTGCGGTCATCTGTGAAGAAGATGTGTGAATTTTGTCAGA
genomic: TTCTTTCAGTTGCCATATACCCTCTCTCTTTACCTCTCAGACACTACAAGgttcgtcttt ... gagaactcagAAGCCATGAAGGTGCGGTCATCTGTGAAGAAGATGTGTGAATTTTGTCAGA
EST: gi|298191145|gb|HO038624.1|HO038624
EST:     TTCTTTCAGTTGCCATATACCCTCTCTCTTTACCTCTCAGACACTACAAG                         AAGCCATGAAGGTGCGGTCATCTGTGAAGAAGATGTGTGAATTTTGTCAGA
genomic: TTCTTTCAGTTGCCATATACCCTCTCTCTTTACCTCTCAGACACTACAAGgttcgtcttt ... gagaactcagAAGCCATGAAGGTGCGGTCATCTGTGAAGAAGATGTGTGAATTTTGTCAGA
EST: gi|19934906|gb|BQ079936.1|BQ079936
EST:     CTTTACCTCTCAGACACTACAAG                         AAGCCATGAAGGTGCGGTCATCTGTGAAGAAGATGTGTGAATTTTGTCAGA
genomic: CTTTACCTCTCAGACACTACAAGgttcgtcttt ... gagaactcagAAGCCATGAAGGTGCGGTCATCTGTGAAGAAGATGTGTGAATTTTGTCAGA
EST: gi|14125779|gb|BG790217.1|BG790217
EST:     TACCCTCTCTCTTTACCTCTCAGACACTACAAG                         AAGCCATGAAGGTGCGGTCATCTGTGAAGAAGATGTGTGAATTTTGTCAGA
genomic: TACCCTCTCTCTTTACCTCTCAGACACTACAAGgttcgtcttt ... gagaactcagAAGCCATGAAGGTGCGGTCATCTGTGAAGAAGATGTGTGAATTTTGTCAGA
EST: gi|13181351|gb|BG352752.1|BG352752
EST:     CATATACCCTCTCTCTTTACCTCTCAGACACTACAAG                         AAGCCATGAAGGTGCGGTCATCTGTGAAGAAGATGTGTGAATTTTGTCAGA
genomic: CATATACCCTCTCTCTTTACCTCTCAGACACTACAAGgttcgtcttt ... gagaactcagAAGCCATGAAGGTGCGGTCATCTGTGAAGAAGATGTGTGAATTTTGTCAGA
EST: gi|9820852|gb|BE556362.1|BE556362
EST:     TACCCTCTCTCTTTACCTCTCAGACACTAC---                         AAGCCATGAAGGTGCGGTCATCTGTGAAGAAGATGTGTGAATTTTGTCAGA
genomic: TACCCTCTCTCTTTACCTCTCAGACACTACAAGgttcgtcttt ... gagaactcagAAGCCATGAAGGTGCGGTCATCTGTGAAGAAGATGTGTGAATTTTGTCAGA
EST: gi|7640110|gb|AW734418.1|AW734418
EST:     TTCTTTCAGTTGCCATATACCCTCTCTCTTTACCTCTCAGACACTACAAG                         AAGCCATGAAGGTGCGGTCATCTGTGAAGAAGATGTGTGAATTTTGTCAGA
genomic: TTCTTTCAGTTGCCATATACCCTCTCTCTTTACCTCTCAGACACTACAAGgttcgtcttt ... gagaactcagAAGCCATGAAGGTGCGGTCATCTGTGAAGAAGATGTGTGAATTTTGTCAGA