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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGCGTTTCATTTTCAAATTTTGATCATCCTCGCCAGTCAAATATGTACTTGATTCTTCGCTTCTTCTGCCCCTTCTCTATACTCTTCTTCACTCCAATAGgtactttatactttctttattttgcgttttcaaacatgtatttgatttactttattcatttaccttttccccagtttttattgatctttttttgtatgat...

Basic information

species Glycine max
transcript GLYMA17G12180.2
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254340214|gb|GR858339.1|GR858339
EST:     GATTCTTCGCTTCTTCTGCCCCTTCTCTATACTCTTCTTCACTCCAATAG                         CTTCTGTGCAAGCGTTCACCGGAACATATGGTATAAATTATGGTAGGATTG
genomic: GATTCTTCGCTTCTTCTGCCCCTTCTCTATACTCTTCTTCACTCCAATAGgtactttata ... tgatttccagCTTCTGTGCAAGCGTTCACCGGAACATATGGTATAAATTATGGTAGGATTG
EST: gi|209720714|gb|BW677532.1|BW677532
EST:     GATTCTTCGCTTCTTCTGCCCCTTCTCTATACTCTTCTTCACTCCAATAG                         CTTCTGTGCAAGCGTTCACCGGAACATATGGTATAAATTATGGTAGGATTG
genomic: GATTCTTCGCTTCTTCTGCCCCTTCTCTATACTCTTCTTCACTCCAATAGgtactttata ... tgatttccagCTTCTGTGCAAGCGTTCACCGGAACATATGGTATAAATTATGGTAGGATTG
EST: gi|21677310|gb|BQ629661.1|BQ629661
EST:     GATTCTTCGCTTCTTCTGCCCCTTCTCTATACTCTTCTTCACTCCAATAG                         CTTCTGTGCAAGCGTTCACCGGAACATATGGTATAAATTATGGTAGGATTG
genomic: GATTCTTCGCTTCTTCTGCCCCTTCTCTATACTCTTCTTCACTCCAATAGgtactttata ... tgatttccagCTTCTGTGCAAGCGTTCACCGGAACATATGGTATAAATTATGGTAGGATTG
EST: gi|192296098|gb|FG989458.1|FG989458
EST:     GATTCTTCGCTTCTTCTGCCCCTTCTCTATACTCTTCTTCACTCCAATAG                         CTTCTGTGCAAGCGTTCACCGGAACATATGGTATAAATTATGGTAGGATTG
genomic: GATTCTTCGCTTCTTCTGCCCCTTCTCTATACTCTTCTTCACTCCAATAGgtactttata ... tgatttccagCTTCTGTGCAAGCGTTCACCGGAACATATGGTATAAATTATGGTAGGATTG