Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|254340214|gb|GR858339.1|GR858339EST: GATTCTTCGCTTCTTCTGCCCCTTCTCTATACTCTTCTTCACTCCAATAG CTTCTGTGCAAGCGTTCACCGGAACATATGGTATAAATTATGGTAGGATTG
genomic: GATTCTTCGCTTCTTCTGCCCCTTCTCTATACTCTTCTTCACTCCAATAGgtactttata ... tgatttccagCTTCTGTGCAAGCGTTCACCGGAACATATGGTATAAATTATGGTAGGATTG
EST:
gi|209720714|gb|BW677532.1|BW677532EST: GATTCTTCGCTTCTTCTGCCCCTTCTCTATACTCTTCTTCACTCCAATAG CTTCTGTGCAAGCGTTCACCGGAACATATGGTATAAATTATGGTAGGATTG
genomic: GATTCTTCGCTTCTTCTGCCCCTTCTCTATACTCTTCTTCACTCCAATAGgtactttata ... tgatttccagCTTCTGTGCAAGCGTTCACCGGAACATATGGTATAAATTATGGTAGGATTG
EST:
gi|21677310|gb|BQ629661.1|BQ629661EST: GATTCTTCGCTTCTTCTGCCCCTTCTCTATACTCTTCTTCACTCCAATAG CTTCTGTGCAAGCGTTCACCGGAACATATGGTATAAATTATGGTAGGATTG
genomic: GATTCTTCGCTTCTTCTGCCCCTTCTCTATACTCTTCTTCACTCCAATAGgtactttata ... tgatttccagCTTCTGTGCAAGCGTTCACCGGAACATATGGTATAAATTATGGTAGGATTG
EST:
gi|192296098|gb|FG989458.1|FG989458EST: GATTCTTCGCTTCTTCTGCCCCTTCTCTATACTCTTCTTCACTCCAATAG CTTCTGTGCAAGCGTTCACCGGAACATATGGTATAAATTATGGTAGGATTG
genomic: GATTCTTCGCTTCTTCTGCCCCTTCTCTATACTCTTCTTCACTCCAATAGgtactttata ... tgatttccagCTTCTGTGCAAGCGTTCACCGGAACATATGGTATAAATTATGGTAGGATTG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tttttgttggctacatcatgttaatggagctctaccctccctgtttgatttccagCTTCTGTGCAAGCGTTCACCGGAACATATGGTATAAATTATGGTAGGATTGCAAATAATATTCCTTCACCCGATGAAGTTGTTACTCTTCTCAGAGCAGA
ctctaccctccctgtt CT-rich tract
atgttaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gattagcaaaataatgttagggatatagaagttgctagcatgtattttttgttggctacatcatgttaatggagctctaccctccctgtttgatttccagCTTCTGTGCAAGCGTTCACCGGAACATATGGTATAAATTATGGTAGGATTGCAAATAATATTCCTTCACCCGATGAAGTTGTTACTCTTCTCAGAGCAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG