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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATTGCCCTTGGTGCAGCAAAAGGATTGGCCTTCCTCCATAATGGTCCCGAACCAGTCATTTATAGAGATTTTAAAACATCTAACATCTTGCTTGATACGgtatgtggttactgaaataaggttttgagaagctttttttgtttttttggattacttattgacatgtagtgtttttattag

Basic information

species Glycine max
transcript GLYMA17G12060.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G12060.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv11s0016g05720.t01 (Vitis vinifera), 5'ss of exon 4
GATTGCCCTTGGTGCAGCAAAAGGATTGGCCTTCCTCCATAATGGTCCCGAACCAGTCATTTATAGAGATTTTAAAACATCTAACATCTTGCTTGATACGgtatgtggttactgaaataaggttttgagaagctttttttgtttttttggattactt-attgacatgtagtgtttttat-tag
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GATTGCACTTGGTGCAGCAAAAGGGCTGGCCTTTCTCCACGAGGGTCCTGAACCTGTTATTTACAGGGACTTCAAGACGTCCAACATTTTACTTGATTCGgtatgtgatta--aaaatgatgatgaaatgtatgcttttatttttgtttagctgcttcacttatatggaatttccttctatag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10232151|gb|BE801039.1|BE801039
EST:     AACCAGTCATTTATAGAGATTTTAAAACATCTAACATCTTGCTTGATACG                         GAGTATAATGCGAAGCTTTCAGATTTTGGTCTAGCAAAAGCAGGGCCTCAA
genomic: AACCAGTCATTTATAGAGATTTTAAAACATCTAACATCTTGCTTGATACGgtatgtggtt ... tttttattagGAGTATAATGCGAAGCTTTCAGATTTTGGTCTAGCAAAAGCAGGGCCTCAA