Sequence
atgc intronic sequence ATGC exonic sequenceAACCTTGTGAAACTTATTGGTTACTGCATTGAAGATGATCAGAGGCTTCTTGTTTACGAGTTTATGACCCGTGGAAGTCTAGAAAATCATCTATTCAGAAgtgagtttctgccttgccttgcctttctacataggaattgtatggattgctatatctagagattatacggtaacagtttttaggtttcttgcacaagtca...
Basic information
species | Glycine max |
transcript | GLYMA17G12060.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA17G12060.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G446189_T01 (Zea mays), 5'ss of exon 5
AACCTTGTGAAACTTATTGGTTACTGCATTGAAGATGATCAGAGGCTTCTTGTTTACGAGTTTATGACCCGTGGAAGTCTAGAAAATCATCTATTCAGAAgtgagtttctgccttgcc---ttgcctttctacataggaattgtatgg-attgctatatctag--agattatacggtaacagtttttaggtttcttgcacaagtca
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CACCTTGTTAAGCTGATTGGATATTGTATTGAGGATGATCAAAGGTTACTTGTATATGAATTCATGGCACGGGGAAGTCTTGAAAATCATCTTTTCAGAAgtaagcaatcacctaacagagttaatgctttaagttgagtagatttagtgcctttattactaatttgtttccccacttaggcctaaccagtttttttctt------
upper sequence: GLYMA17G12060.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv11s0016g05720.t01 (Vitis vinifera), 5'ss of exon 3
AACCTTGTGAAACTTATTGGTTACTGCATTGAAGATGATCAGAGGCTTCTTGTTTACGAGTTTATGACCCGTGGAAGTCTAGAAAATCATCTATTCAGAAgtgagtttctgccttgccttgcctttctacataggaattgtatggattgctatatctagagattatacggtaacagtttttaggtttcttgcacaagtca--
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AATCTTGTTAAACTTATTGGGTACTGCATTGAAGATGATCAGCGACTGCTTGTTTATGAATTTATGACCCGTGGAAGCCTTGAAAATCACCTTTTCAGAAgtgagtttcgacactctctcctcttggcttatcatcatgatagaattagtgatatatggtatttattttataat--ttctgaaaatatgatcatctgccatgMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|10232151|gb|BE801039.1|BE801039EST: TGTTTACGAGTTTATGACCCGTGGAAGTCTAGAAAATCATCTATTCAGAAA GAACCGTACCTCTTCCGTGGTCCAACAGGATTAAGATTGCCCTTGGTGCA
genomic: TGTTTACGAGTTTATGACCCGTGGAAGTCTAGAAAATCATCTATTCAG-AAgtgagtttct ... atatttgaagGAACTGTACCTCTTCCGTGGTCCAACAGGATTAAGATTGCCCTTGGTGCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AACCTTGTGAAACTTATTGGTTACTGCATTGAAGATGATCAGAGGCTTCTTGTTTACGAGTTTATGACCCGTGGAAGTCTAGAAAATCATCTATTCAGAAgtgagtttctgccttgccttgcctttctacataggaattgtatggattgctatatctagagattatacggtaacagtttttaggtttcttgcacaagtca
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