Sequence
atgc intronic sequence ATGC exonic sequencegtaaaaatcaaaatccaaatccctaaattcctcatttcattttattaatgaaaaattgatgatttgatttaactgcagAGGAACGTAGGGGAAGATAAAGAGATGACGATAAAACCTGTTGTTCGTGTTTCGGAGGGGAAGCTGGTGGTGAAGGAGCGAACGATTTTGACCGGAATGC
Basic information
species | Glycine max |
transcript | GLYMA17G11970.3 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|5058409|gb|AI736941.1|AI736941EST: ACATTTCTTCAATCGAGTGTTTCCAGTGGTATCATCCAAG AGGAACGTAGGGGAAGATAAAGAGATGACGATAAAACCTGTTGTTCGTGTT
genomic: ACATTTCTTCAATCGAGTGTTTCCAGTGGTATCATCCAAGgtaaaaatca ... ttaactgcagAGGAACGTAGGGGAAGATAAAGAGATGACGATAAAACCTGTTGTTCGTGTT
EST:
gi|209698437|gb|BW667234.1|BW667234EST: GACATTTCTTCAATCGAGTGTTTCCAGTGGTATCATCCAAG AGGAACGTAGGGGAAGATAAAGAGATGACGATAAAACCTGTTGTTCGTGTT
genomic: GACATTTCTTCAATCGAGTGTTTCCAGTGGTATCATCCAAGgtaaaaatca ... ttaactgcagAGGAACGTAGGGGAAGATAAAGAGATGACGATAAAACCTGTTGTTCGTGTT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.taaattcctcatttcattttattaatgaaaaattgatgatttgatttaactgcagAGGAACGTAGGGGAAGATAAAGAGATGACGATAAAACCTGTTGTTCGTGTTTCGGAGGGGAAGCTGGTGGTGAAGGAGCGAACGATTTTGACCGGAATGC
atttcattttattaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaaaaatcaaaatccaaatccctaaattcctcatttcattttattaatgaaaaattgatgatttgatttaactgcagAGGAACGTAGGGGAAGATAAAGAGATGACGATAAAACCTGTTGTTCGTGTTTCGGAGGGGAAGCTGGTGGTGAAGGAGCGAACGATTTTGACCGGAATGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG