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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacatattatccatctatctgcttataattatattttcacttatctttttgatcttttgttttgctaacggcaatggtttccttctgcatattttcgaattcgcagACATTTCTTCAATCGAGTGTTTCCAGTGGTATCATCCAAG

Basic information

species Glycine max
transcript GLYMA17G11970.3
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|5058409|gb|AI736941.1|AI736941
EST:     CCCAATAAGAAGCAACTCTCAATTTCTG                         ACATTTCTTCAATCGAGTGTTTCCAGTGGTATCATCCAAG
genomic: CCCAATAAGAAGCAACTCTCAATTTCTGgtacatatta ... gaattcgcagACATTTCTTCAATCGAGTGTTTCCAGTGGTATCATCCAAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atcttttgttttgctaacggcaatggtttccttctgcatattttcgaattcgcagACATTTCTTCAATCGAGTGTTTCCAGTGGTATCATCCAAG
           tgctaac  putative branch site (score: 1)
                                     atatttt  TA-rich tract