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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgttttctccctcaccttatgattgtttgtctactacttgttttatgtttctgctatttgttacatgtttgtagattgtaggaggaacaattgttggataagttaagattttgattccaagtgtttctatgctctctctctctcttgtagCTATATTTTCAGCTATCTCAGCTACAAGACCCAGGGCTGATGTTGCCTATTGTATCCACGCACTTGCCAGGCGGTTATCAAAGACACATAACTGGGCG

Basic information

species Glycine max
transcript GLYMA17G11910.2
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6719830|gb|AW307477.1|AW307477
EST:     TAGAGCCACAAATCATGTTGAACGTCCGGCTAAGGAAAAACATATAAGAG                         CTATATTTTCAGCTATCTCAGCTACAAGACCCAGGGCTGATGTTGCCTATT
genomic: TAGAGCCACAAATCATGTTGAACGTCCGGCTAAGGAAAAACATATAAGAGgtttgttttc ... tctcttgtagCTATATTTTCAGCTATCTCAGCTACAAGACCCAGGGCTGATGTTGCCTATT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggataagttaagattttgattccaagtgtttctatgctctctctctctcttgtagCTATATTTTCAGCTATCTCAGCTACAAGACCCAGGGCTGATGTTGCCTATTGTATCCACGCACTTGCCAGGCGGTTATCAAAGACACATAACTGGGCG
             ttttgat  putative branch site (score: 4)
                          tgtttctatgctctct  putative PPT
       ttaagattttgatt  TA-rich tract