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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aagactcaaatgctacatttgatattttactatttagaatatatgtaagcatatgtcttggggtcaatttatatgttatcttgttaatgatggttttcagCTGTTGAGCAACAACCTTCTGCTGCTTCAAATCAAGCAAATGGAACTACAGGATGGGAATTGGCACTTGTTACTGCTCCTAGTTCAAACGAGACTGCCAC

Basic information

species Glycine max
transcript GLYMA17G11910.2
intron # 14
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15814166|gb|BI786441.1|BI786441
EST:     TGCAGAGTTGGAAGAGAAGAATGCATTGGCTTTAGCCATTGTCCCCGTTG                         CTGTTGAGCAACAACCTTCTGCTGCTTCAAATCAAGCAAATGGAACTACAG
genomic: TGCAGAGTTGGAAGAGAAGAATGCATTGGCTTTAGCCATTGTCCCCGTTGgtaatttgtt ... tggttttcagCTGTTGAGCAACAACCTTCTGCTGCTTCAAATCAAGCAAATGGAACTACAG
EST: gi|6566991|gb|AW234618.1|AW234618
EST:     TGCAGAGTTGGAAGAGAAGAATGCATTGGCTTTAGCCATTGTCCCCGTTG                         CTGTTGAGCAACAACCTTCTGCTGCTTCAAATCAAGCAAATGGAACTACAG
genomic: TGCAGAGTTGGAAGAGAAGAATGCATTGGCTTTAGCCATTGTCCCCGTTGgtaatttgtt ... tggttttcagCTGTTGAGCAACAACCTTCTGCTGCTTCAAATCAAGCAAATGGAACTACAG
EST: gi|192317601|gb|FK008997.1|FK008997
EST:     TGCAGAGTTGGAAGAGAAGAATGCATTGGCTTTAGCCATTGTCCCCGTTG                         CTGTTGAGCAACAACCTTCTGCTGCTTCAAATCAAGCAAATGGAACTACAG
genomic: TGCAGAGTTGGAAGAGAAGAATGCATTGGCTTTAGCCATTGTCCCCGTTGgtaatttgtt ... tggttttcagCTGTTGAGCAACAACCTTCTGCTGCTTCAAATCAAGCAAATGGAACTACAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taagcatatgtcttggggtcaatttatatgttatcttgttaatgatggttttcagCTGTTGAGCAACAACCTTCTGCTGCTTCAAATCAAGCAAATGGAACTACAGGATGGGAATTGGCACTTGTTACTGCTCCTAGTTCAAACGAGACTGCCAC
                                    tgttaat  putative branch site (score: 3)
                                                ttttc  putative PPT
                    aatttatatgttatct  TA-rich tract