1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
...aagactcaaatgctacatttgatattttactatttagaatatatgtaagcatatgtcttggggtcaatttatatgttatcttgttaatgatggttttcagCTGTTGAGCAACAACCTTCTGCTGCTTCAAATCAAGCAAATGGAACTACAGGATGGGAATTGGCACTTGTTACTGCTCCTAGTTCAAACGAGACTGCCAC
species | Glycine max |
transcript | GLYMA17G11910.1 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: TGCAGAGTTGGAAGAGAAGAATGCATTGGCTTTAGCCATTGTCCCCGTTG CTGTTGAGCAACAACCTTCTGCTGCTTCAAATCAAGCAAATGGAACTACAGEST: gi|6566991|gb|AW234618.1|AW234618
genomic: TGCAGAGTTGGAAGAGAAGAATGCATTGGCTTTAGCCATTGTCCCCGTTGgtaatttgtt ... tggttttcagCTGTTGAGCAACAACCTTCTGCTGCTTCAAATCAAGCAAATGGAACTACAG
EST: TGCAGAGTTGGAAGAGAAGAATGCATTGGCTTTAGCCATTGTCCCCGTTG CTGTTGAGCAACAACCTTCTGCTGCTTCAAATCAAGCAAATGGAACTACAGEST: gi|192317601|gb|FK008997.1|FK008997
genomic: TGCAGAGTTGGAAGAGAAGAATGCATTGGCTTTAGCCATTGTCCCCGTTGgtaatttgtt ... tggttttcagCTGTTGAGCAACAACCTTCTGCTGCTTCAAATCAAGCAAATGGAACTACAG
EST: TGCAGAGTTGGAAGAGAAGAATGCATTGGCTTTAGCCATTGTCCCCGTTG CTGTTGAGCAACAACCTTCTGCTGCTTCAAATCAAGCAAATGGAACTACAG
genomic: TGCAGAGTTGGAAGAGAAGAATGCATTGGCTTTAGCCATTGTCCCCGTTGgtaatttgtt ... tggttttcagCTGTTGAGCAACAACCTTCTGCTGCTTCAAATCAAGCAAATGGAACTACAG
taagcatatgtcttggggtcaatttatatgttatcttgttaatgatggttttcagCTGTTGAGCAACAACCTTCTGCTGCTTCAAATCAAGCAAATGGAACTACAGGATGGGAATTGGCACTTGTTACTGCTCCTAGTTCAAACGAGACTGCCAC
tgttaat putative branch site (score: 3)
ttttc putative PPT
aatttatatgttatct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aagactcaaatgctacatttgatattttactatttagaatatatgtaagcatatgtcttggggtcaatttatatgttatcttgttaatgatggttttcagCTGTTGAGCAACAACCTTCTGCTGCTTCAAATCAAGCAAATGGAACTACAGGATGGGAATTGGCACTTGTTACTGCTCCTAGTTCAAACGAGACTGCCAC
- -actcaaa
- - - - - tgctaca
- - - - - - - - - - - - - - - - - - - - - -tgtaagc
- - - - - - - - - - - - - - - - - - - - - - - - - - -tgtcttg