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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTATCCAGGAAGCAATTCGATCCAAGATCAACACAACCGCCACGAAAGACAGTTTTGTCCCAAAAGACTCCATTTACTGGAATCCACACGCTTTTCACCAgttaagcttttaacagtccttgatctctgattatttttgttttattttcctttttggtttgatttcaaaagttgcttttttgttcacaagtaaccctgtt...

Basic information

species Glycine max
transcript GLYMA17G11850.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51344329|gb|CO985062.1|CO985062
EST:     AGTTTTGTCCCAAAAGACTCCATTTACTGGAATCCACACGCTTTTCACCAAACA                      
genomic: AGTTTTGTCCCAAAAGACTCCATTTACTGGAATCCACACGCTTTTCA-C---CAgttaagcttt ... tttagaa
EST: gi|51344329|gb|CO985062.1|CO985062
EST:     AGTTTTGTCCCAAAAGACTCCATTTACTGGAATCCACACGCTTTTCACCAAACA                      
genomic: AGTTTTGTCCCAAAAGACTCCATTTACTGGAATCCACACGCTTTTCA-C---CAgttaagcttt ... tttagaa
EST: gi|213600135|gb|DB970239.1|DB970239
EST:     AGTTTTGTCCCAAAAGACTCCATTTACTGGAATCCACACGCTTTTCACCA                         GAGCCATGTGGAGATGAT
genomic: AGTTTTGTCCCAAAAGACTCCATTTACTGGAATCCACACGCTTTTCACCAgttaagcttt ... tttagaacagGAGCCATGTGGAGATGAT
EST: gi|192302997|gb|FG997013.1|FG997013
EST:     AGTTTTGTCCCAAAAGACTCCATTTACTGGAATCCACACGCTTTTCACCA                         GAGCCATGTGGAGATGATGAAGAGGTTAAAGGTTTGGGCATACAAGGAAGG
genomic: AGTTTTGTCCCAAAAGACTCCATTTACTGGAATCCACACGCTTTTCACCAgttaagcttt ... tttagaacagGAGCCATGTGGAGATGATGAAGAGGTTAAAGGTTTGGGCATACAAGGAAGG