1 5' 3' | 2 5' 3' | 3 5' 3' |
...acataaagaaaaataatcgaacacagaactattttaagttttagccgaaataaataaagcgggcccattgagcttaagtgattaatcttgtttagaacagGAGCCATGTGGAGATGATGAAGAGGTTAAAGGTTTGGGCATACAAGGAAGGGGAGCAGCCATTGGTGCATGATGGGCCTGTAAACAATAAATACTCCATT
species | Glycine max |
transcript | GLYMA17G11850.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGTTTTGTCCCAAAAGACTCCATTTACTGGAATCCACACGCTTTTCACCAAACAEST: gi|51344329|gb|CO985062.1|CO985062
genomic: AGTTTTGTCCCAAAAGACTCCATTTACTGGAATCCACACGCTTTTCA-C---CAgttaagcttt ... tttagaa
EST: AGTTTTGTCCCAAAAGACTCCATTTACTGGAATCCACACGCTTTTCACCAAACAEST: gi|213600135|gb|DB970239.1|DB970239
genomic: AGTTTTGTCCCAAAAGACTCCATTTACTGGAATCCACACGCTTTTCA-C---CAgttaagcttt ... tttagaa
EST: AGTTTTGTCCCAAAAGACTCCATTTACTGGAATCCACACGCTTTTCACCA GAGCCATGTGGAGATGATEST: gi|192302997|gb|FG997013.1|FG997013
genomic: AGTTTTGTCCCAAAAGACTCCATTTACTGGAATCCACACGCTTTTCACCAgttaagcttt ... tttagaacagGAGCCATGTGGAGATGAT
EST: AGTTTTGTCCCAAAAGACTCCATTTACTGGAATCCACACGCTTTTCACCA GAGCCATGTGGAGATGATGAAGAGGTTAAAGGTTTGGGCATACAAGGAAGG
genomic: AGTTTTGTCCCAAAAGACTCCATTTACTGGAATCCACACGCTTTTCACCAgttaagcttt ... tttagaacagGAGCCATGTGGAGATGATGAAGAGGTTAAAGGTTTGGGCATACAAGGAAGG
cgaaataaataaagcgggcccattgagcttaagtgattaatcttgtttagaacagGAGCCATGTGGAGATGATGAAGAGGTTAAAGGTTTGGGCATACAAGGAAGGGGAGCAGCCATTGGTGCATGATGGGCCTGTAAACAATAAATACTCCATT
gattaat putative branch site (score: 3)
tcttgttt CT-rich tract
attaatcttgttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acataaagaaaaataatcgaacacagaactattttaagttttagccgaaataaataaagcgggcccattgagcttaagtgattaatcttgtttagaacagGAGCCATGTGGAGATGATGAAGAGGTTAAAGGTTTGGGCATACAAGGAAGGGGAGCAGCCATTGGTGCATGATGGGCCTGTAAACAATAAATACTCCATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - -aaaataa
- - - - - - - - - - - - - - - - - - - - - - - -aaataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcgggcc