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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGCTATAGCTTCAACGAATGCAATTATATCGGCTGCATGTGCACTAGAAACATTAAAGATTGCAACAGAGTGCAGCAAAATTTTGTCGAACTATTTAACgtatggcctttatcttattattatttgccttttggccgtaaatattattgattggttaatacctgtag

Basic information

species Glycine max
transcript GLYMA17G01940.2
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G01940.2 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G007915_T02 (Zea mays), 5'ss of exon 7
CAGCTATAGCTTCAACGAATGCAATTATATCGGCTGCATGTGCACTAGAAACATTAAAGATTGCAACAGAGTGCAGCAAAATTTTGTCGAACTATTTAACgtatggcct-ttatcttattattatttgcc-ttttggccgtaaatattattgattggttaatacctgtag------------------------------
|||| || || |||||||||||||||||||||||||| |||||| | ||| | |||||| ||    | | ||||||||||| | |||| |||||| | ||||  |  |  || | |||| |    | |    | |    ||   | |  |  ||||  |        | |                              
CAGCCATTGCATCAACGAATGCAATTATATCGGCTGCTTGTGCATTGGAAGCCTTAAAGCTTATTTCTGGGTGCAGCAAAAGTGTGTCAAACTATCTCACgtgagttccattgttttataacccatagttactgtaaaagttggtttcctcaattgtatggactaaatgggttaaatattagtctgcacacatttaagct

upper sequence: GLYMA17G01940.2 (Glycine max), 5'ss of exon 7
lower sequence: Vv05s0020g02820.t01 (Vitis vinifera), 5'ss of exon 7
CAGCTATAGCTTCAACGAATGCAATTATATCGGCTGCATGTGCACTAGAAACATTAAAGATTGCAACAGAGTGCAGCAAAATTTTGTCGAACTATTTAACgtatggc---ctttatctt--attattatttgccttttggccgtaaatattattgattggttaatacctgtag---------------------------
| || || || || || ||||||||||| || |||||||||||||| ||||| || ||||||| | |||  |||||||||| ||| || |||||| ||||||  | |   |||  ||||  ||| ||| ||    ||   |   | | | | |||      | |||    |                             
CGGCCATTGCATCCACAAATGCAATTATTTCAGCTGCATGTGCACTGGAAACCTTGAAGATTGTATCAGGATGCAGCAAAACTTTATCAAACTATCTAACgtgcgccatacttcctcttcaatttttaattaatattcaacttcacaaagtcttgtccttgttatatggatcattttattagaactaaatgataggttaa
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254338438|gb|GR849856.1|GR849856
EST:     ACATTAAAGATTGCAACAGAGTGCAGCAAAATTTTGTCGAACTATTTAAC                         GTATAATGGATCA
genomic: ACATTAAAGATTGCAACAGAGTGCAGCAAAATTTTGTCGAACTATTTAACgtatggcctt ... atacctgtagGTATAATGGATCA
EST: gi|209729758|gb|BW658563.1|BW658563
EST:     CATTAAAGATTGCAACAGAGTGCAGCAAAATTTTGTCGAACTATTTAAC                         GTATAATGGATCAGAAGGCCTCCATACTGAAGTGGCAAGATTNGAAAGGGA
genomic: CATTAAAGATTGCAACAGAGTGCAGCAAAATTTTGTCGAACTATTTAACgtatggcctt ... atacctgtagGTATAATGGATCAGAAGGCCTCCATACTGAAGTGGCAAGATTTGAAAGGGA