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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCTCCAATGGCGGATACCTCAGGTCGATCCAGGGACCTCGACAAGCTCCTTCTCCGCCCTGGCAATCTCGTCGGTCCCAGGTTCGAACCAGGCGCTGAGgtattattactctttcttcttcttctataactattactattcctgttacagtgctactactctctctctctctctctctctctctctctctctctctata...

Basic information

species Glycine max
transcript GLYMA17G01940.2
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G01940.2 (Glycine max), 5'ss of exon 1
lower sequence: Vv05s0020g02820.t01 (Vitis vinifera), 5'ss of exon 1
---AGCTCCAATGGCGGATACCTCAGGTCGATCCAGGGACCTCGACAAGCTCCTTCTCCGCCCTGGCAATCTCGTCGGTCCCAGGTTCGAACCAGGCGCTGAGgtattattactctttcttcttcttctataactattactattcctgttacagtgctactactctctctctctctctctctctctctctctctctctctata-
    |   | | |||| |        |  ||||  ||||||||||||||||||||||||| || ||| |||| || || ||||  ||||| || ||| | ||||| |  ||            || | | |   |||  |  ||  | |||   |  |  || | | | |   | | ||  |   |   | | |     |  | 
GGCGGACTCCACGGCGCACGTT---AGCAGATCACGGGACCTCGACAAGCTCCTTCTCCGTCCCGGCCATCTTGTTGGCCCCACCTTCGAGCCTGGCCCCGAGgtct--ttctctcaaaacagtcgtgtttgtttatcgcatttatttttat--tatttttatttt-tttgggtgtttcaatagttgattttttggtgttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209699694|gb|BW652079.1|BW652079
EST:     TTCTCCGCCCTGGCAATCTCGTCGGTCCCAGGTTCGAACCAGGCGCTGAG                         TTGCGAGATGACCTTCAGGCCTTCGCCAAAGTGTTGGTGGTAGGGGCCGGT
genomic: TTCTCCGCCCTGGCAATCTCGTCGGTCCCAGGTTCGAACCAGGCGCTGAGgtattattac ... tctgtcgcagTTGCGAGATGACCTTCAGGCCTTCGCCAAAGTGTTGGTGGTAGGGGCCGGT
EST: gi|209729757|gb|BW658562.1|BW658562
EST:     TTCTCCGCCCTGGCAATCTCGTCGGTCCCAGGTTCGAACCAGGCGCTGAG                         TTGCGAGATGACCTTCAGGCCTTCGCCAAAGTGTTGGTGGTAGGGGCCGGT
genomic: TTCTCCGCCCTGGCAATCTCGTCGGTCCCAGGTTCGAACCAGGCGCTGAGgtattattac ... tctgtcgcagTTGCGAGATGACCTTCAGGCCTTCGCCAAAGTGTTGGTGGTAGGGGCCGGT
EST: gi|208231914|gb|GE032731.1|GE032731
EST:     TTCTCCGCCCTGGCAATCTCGTCGGTCCCAGGTTCGAACCAGGCGCTGAG                         TTGCGAGATGACCTTCAGGCCTTCG
genomic: TTCTCCGCCCTGGCAATCTCGTCGGTCCCAGGTTCGAACCAGGCGCTGAGgtattattac ... tctgtcgcagTTGCGAGATGACCTTCAGGCCTTCG
EST: gi|213602250|gb|DB958510.1|DB958510
EST:     TTCTCCGCCCTGGCAATCTCGTCGGTCCCAGGTTCGAACCAGGCGCTGAG                         TTGCGAGATGACCTTCAGGCCTTCGCCAAAGTGTTGGTGGTAGGGGCCGGT
genomic: TTCTCCGCCCTGGCAATCTCGTCGGTCCCAGGTTCGAACCAGGCGCTGAGgtattattac ... tctgtcgcagTTGCGAGATGACCTTCAGGCCTTCGCCAAAGTGTTGGTGGTAGGGGCCGGT